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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT4G36240.1 |
| Common Name | F23E13.130, GATA7 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
GATA |
| Protein Properties |
Length: 238aa MW: 26799.2 Da PI: 8.3996 |
| Description |
GATA transcription factor 7 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 58.4 | 9.7e-19 | 166 | 200 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
AT4G36240.1 166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 200
*******************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MECVEAFLGD FSVDDLLDLS NADTSLESSS SQRKEDEQER EKFKSFSDQS TRLSPPEDLL 60
SFPGDAPVGD LEDLEWLSNF VEDSFSESYI SSDFPVNPVA SVEVRRQCVP VKPRSKRRRT 120
NGRIWSMESP SPLLSTAVAR RKKRGRQKVD ASYGGVVQQQ QLRRCCSHCG VQKTPQWRMG 180
PLGAKTLCNA CGVRFKSGRL LPEYRPACSP TFTNEIHSNS HRKVLELRLM KVADPARV
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| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY072434 | 0.0 | AY072434.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds. |
| GenBank | AY114720 | 0.0 | AY114720.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Jeong MJ,Jeong MJ,Shih MC
Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis.
Biochem. Biophys. Res. Commun., 2003. 300(2): p. 555-62
[PMID:12504119] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Reyes JC,Muro-Pastor MI,Florencio FJ
The GATA family of transcription factors in Arabidopsis and rice.
Plant Physiol., 2004. 134(4): p. 1718-32
[PMID:15084732] - Nakayama N, et al.
Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens.
Plant Cell, 2005. 17(9): p. 2486-506
[PMID:16055634] - Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
Plant Physiol., 2007. 143(2): p. 941-58
[PMID:17208962] - Peng M,Bi YM,Zhu T,Rothstein SJ
Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA.
Plant Mol. Biol., 2007. 65(6): p. 775-97
[PMID:17885809] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444]
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