PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G31270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 33369.4 Da PI: 4.591 | ||||||||
Description | sequence-specific DNA binding transcription factors | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.2 | 2.7e-10 | 19 | 97 | 2 | 80 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W + l+L++ +e + +++ + ++W + +++ + ++r+ +qC+ kw++l +y +ik++e++ + + +s ++ AT4G31270.1 19 WAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDVSRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWS 97 99999999************************************************************98777776776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-8 | 18 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MEEGTSGSRR TRSQVAPEWA VKDCLVLVNE IAAVEADCSN ALSSFQKWTM ITENCNALDV 60 SRNLNQCRRK WDSLMSDYNQ IKKWESQYRG TGRSYWSLSS DKRKLLNLPG DIDIELFEAI 120 NAVVMIQDEK AGTESDSDPE AQDVVDLSAE LAFVGSKRSR QRTMVMKETK KEEPRTSRVQ 180 VNTREKPITT KATHQNKTMG EKKPVEDMST DEEEDETMNI EEDVEVMEAK LSYKIDLIHA 240 IVGRNLAKDN ETKDGVSMDD KLKSVRQQGD ELIGCLSEIV STLNRLHEVP QEIE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 156 | 161 | KRSRQR |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 145350488 | 0.0 | ||||
Genevisible | 253543_at | 0.0 | ||||
Expression Atlas | AT4G31270 | - | ||||
AtGenExpress | AT4G31270 | - | ||||
ATTED-II | AT4G31270 | - |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G31270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G31270 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK118674 | 0.0 | AK118674.1 Arabidopsis thaliana At4g31270 mRNA for unknown protein, complete cds, clone: RAFL19-94-K08. | |||
GenBank | BT005287 | 0.0 | BT005287.1 Arabidopsis thaliana At4g31270 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_194855.2 | 0.0 | sequence-specific DNA binding transcription factor | ||||
TrEMBL | A0A178UYC3 | 0.0 | A0A178UYC3_ARATH; Uncharacterized protein | ||||
TrEMBL | Q8GWR8 | 0.0 | Q8GWR8_ARATH; At4g31270 | ||||
STRING | AT4G31270.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12154 | 23 | 28 |
Representative plant | OGRP7482 | 13 | 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G31270.1 |
Entrez Gene | 829254 |
iHOP | AT4G31270 |
wikigenes | AT4G31270 |
Publications ? help Back to Top | |||
---|---|---|---|
|