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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT4G29930.3 |
| Common Name | BHLH27, EN42, F27B13.170 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 263aa MW: 30280.3 Da PI: 4.8372 |
| Description |
bHLH family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.1 | 2.4e-11 | 57 | 99 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
Er+RR+++N++++ Lr+++P+ + Kl+Ka++ + ++Y+++L
AT4G29930.3 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99
57*********************66......***************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER 60
NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKTLEAEI RELESRSTLL 120
ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV 180
VCITCSKKRE TMVQLCKVLE SLNLNILTTN FSSFTSRLST TLFLQVTLSL SPSLISLFGN 240
VITSTNYKIL NASREYCTCL VLV
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
| Function -- GeneRIF ? help
Back to Top |
- Two Arabidopsis basic helix-loop-helix transcription factors bHLH25 and bHLH27 positively influence cyst nematode parasitism.
[PMID: 21223395]
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ630482 | 0.0 | AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Seki M, et al.
Functional annotation of a full-length Arabidopsis cDNA collection.
Science, 2002. 296(5565): p. 141-5
[PMID:11910074] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Plant Cell, 2003. 15(11): p. 2497-502
[PMID:14600211] - Jiao Y, et al.
A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
Plant Physiol., 2003. 133(4): p. 1480-93
[PMID:14605227] - Gong W, et al.
Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
Plant Physiol., 2004. 135(2): p. 773-82
[PMID:15208423] - De Paepe A,Vuylsteke M,Van Hummelen P,Zabeau M,Van Der Straeten D
Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis.
Plant J., 2004. 39(4): p. 537-59
[PMID:15272873] - Bauer P, et al.
Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato.
Plant Physiol., 2004. 136(4): p. 4169-83
[PMID:15531708] - Rehrauer H, et al.
AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.
Plant Physiol., 2010. 152(2): p. 487-99
[PMID:20032078] - Jin J,Hewezi T,Baum TJ
The Arabidopsis bHLH25 and bHLH27 transcription factors contribute to susceptibility to the cyst nematode Heterodera schachtii.
Plant J., 2011. 65(2): p. 319-28
[PMID:21223395] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map.
Science, 2011. 333(6042): p. 601-7
[PMID:21798944] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444]
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