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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT4G29190.1 |
| Common Name | AtC3H49, AtOZF2, AtTZF3, F17A13.10, OZF2, TZF3 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C3H |
| Protein Properties |
Length: 356aa MW: 40264.4 Da PI: 6.5884 |
| Description |
C3H family protein |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.1 | 6.3e-08 | 124 | 144 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C++f++ G Ck Gd+C FaHg
AT4G29190.1 124 ACPDFRK-GGCKKGDSCEFAHG 144
7******.*************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MMIGETRRTY PTVEIPPWPV LEELTTSEFF SPVMNSPDCS MLEALAGLQR YLPSNEPDPE 60
SYPDLLGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY 120
SGTACPDFRK GGCKKGDSCE FAHGVFECWL HPARYRTQPC KDGGNCLRKI CFFAHSPDQL 180
RFLHTRSPDR VDSFDVSSPI RARAFQLSIS PVSGSPPMSP RADSESSPMT QSLSRSLGSC 240
SINDVVPSFR NLQFNSVKSF PRNNPLFGFG SPRGSILGPG FQSLPTTPTR PGNLDIWEYG 300
LEEEPVMERV VESGRELREK MREKLHKENC MDRVAQDPDQ NLGEAPDVGW VSDLLM
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| Function -- GeneRIF ? help
Back to Top |
- AtOZF2 is involved in the abscissic acid and salt stress response through the ABI2-mediated signaling pathway.[AtOZF2]
[PMID: 22121246]
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL161574 | 0.0 | AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70. |
| GenBank | AY045970 | 0.0 | AY045970.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds. |
| GenBank | AY079323 | 0.0 | AY079323.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds. |
| GenBank | AY085636 | 0.0 | AY085636.1 Arabidopsis thaliana clone 16432 mRNA, complete sequence. |
| GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - S
ABA activates ADPR cyclase and cADPR induces a subset of ABA-responsive genes in Arabidopsis.
Plant J., 2004. 38(3): p. 381-95
[PMID:15086800] - Ishihara T, et al.
Comparative analysis of expressed sequence tags in resistant and susceptible ecotypes of Arabidopsis thaliana infected with cucumber mosaic virus.
Plant Cell Physiol., 2004. 45(4): p. 470-80
[PMID:15111722] - Hampton CR, et al.
Cesium toxicity in Arabidopsis.
Plant Physiol., 2004. 136(3): p. 3824-37
[PMID:15489280] - Delaney KJ, et al.
Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
Plant Physiol., 2006. 140(4): p. 1507-21
[PMID:16500995] - Xin Z,Mandaokar A,Chen J,Last RL,Browse J
Arabidopsis ESK1 encodes a novel regulator of freezing tolerance.
Plant J., 2007. 49(5): p. 786-99
[PMID:17316173] - Kong H, et al.
Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.
Plant J., 2007. 50(5): p. 873-85
[PMID:17470057] - Wang D, et al.
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
BMC Genomics, 2008. 9: p. 44
[PMID:18221561] - Licausi F, et al.
Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability.
New Phytol., 2011. 190(2): p. 442-56
[PMID:20840511] - Huang P, et al.
Molecular and physiological characterization of the Arabidopsis thaliana Oxidation-related Zinc Finger 2, a plasma membrane protein involved in ABA and salt stress response through the ABI2-mediated signaling pathway.
Plant Cell Physiol., 2012. 53(1): p. 193-203
[PMID:22121246] - Lee SJ,Jung HJ,Kang H,Kim SY
Arabidopsis zinc finger proteins AtC3H49/AtTZF3 and AtC3H20/AtTZF2 are involved in ABA and JA responses.
Plant Cell Physiol., 2012. 53(4): p. 673-86
[PMID:22383628] - Lumba S, et al.
A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.
Dev. Cell, 2014. 29(3): p. 360-72
[PMID:24823379] - Dokládal L, et al.
cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
Front Plant Sci, 2015. 6: p. 985
[PMID:26617625] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786]
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