PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G28811.1
Common NameBHLH119, EN104, F16A16.80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 544aa    MW: 59686.5 Da    PI: 8.6305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G28811.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-15361407455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +hn  ErrRR+riN+++ +L+ellP +     +K +K+++Le ++eY+ksLq
  AT4G28811.1 361 MHNLSERRRRERINERMKTLQELLPRC-----RKTDKVSMLEDVIEYVKSLQ 407
                  7*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.177357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-19360431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-13361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-19361422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-4372411No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGEDDIVELL WNGQVVRTSQ PQRPSSGKPS PTPPILRGSG SGSGEENAPL PLPLLQPPRP  60
LHHQNLFIRE EEMSSWLHYS YTGVTSTPAT HPQSSVSLPP PPPIAPSEDD VVELLWKSGQ  120
VVQSIQTQRP IPPPIFRGSG SGGGEETVLP LPPLHPSHQN IFIQEDEMAS WLYHPLRQDY  180
FSSGVASTSA TRPQSSASLA PTPPPPSVPY GQIPVERRTE NFMNFLRLRG NIFSGGRVEA  240
GPVVIESTQI GSSATPSSSA AESCVIPATH GTESRAAAIT GVSRTFAVPG LGRRGKEVAT  300
ETAGTSYSGV NKAETERVQI QPERETKITE DKKREETIAE IQGTEEAHGS TSRKRSRAAD  360
MHNLSERRRR ERINERMKTL QELLPRCRKT DKVSMLEDVI EYVKSLQLQI QMMSMGHGMM  420
PPMMHEGNTQ QFMPHMAMGM KGMNRPPPFV PFPGKTFPRP GHMAGVGPSY PALRYPFPDT  480
QASDLSRVHV PSLHSNPVPN QPRFPAYINP YSQFVGLHQM QQPPLPLQGQ PTSQPSFSHA  540
STSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352369RKRSRAADMHNLSERRRR
2365370ERRRRE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT4G28811
AtGenExpressAT4G28811
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G28811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G28811
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0353530.0AL035353.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16A16 (ESSAII project).
GenBankAL1615730.0AL161573.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078462.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ8GT730.0BH119_ARATH; Transcription factor bHLH119
TrEMBLD7MD820.0D7MD82_ARALL; Uncharacterized protein
STRINGAT4G28811.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Representative plantOGRP25816128
Publications ? help Back to Top
  1. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  2. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  3. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  4. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]