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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT4G28110.1 |
| Common Name | AtMYB41, MYB41 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MYB |
| Protein Properties |
Length: 282aa MW: 31651.6 Da PI: 5.9026 |
| Description |
myb domain protein 41 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.5 | 7.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+d+++ +G+g+W+t ++ g++R++k+c++rw +yl
AT4G28110.1 14 KGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 54.3 | 3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ eE+e +++++ +G++ W++Ia++++ gRt++++k++w+++
AT4G28110.1 67 RGRFSFEEEETIIQLHSVMGNK-WSAIAARLP-GRTDNEIKNHWNTH 111
89********************.*********.************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0010200 | Biological Process | response to chitin |
| GO:0016049 | Biological Process | cell growth |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0042335 | Biological Process | cuticle development |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0080091 | Biological Process | regulation of raffinose metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MGRSPCCDKN GVKKGPWTAE EDQKLIDYIR FHGPGNWRTL PKNAGLHRCG KSCRLRWTNY 60
LRPDIKRGRF SFEEEETIIQ LHSVMGNKWS AIAARLPGRT DNEIKNHWNT HIRKRLVRSG 120
IDPVTHSPRL DLLDLSSLLS ALFNQPNFSA VATHASSLLN PDVLRLASLL LPLQNPNPVY 180
PSNLDQNLQT PNTSSESSQP QAETSTVPTN YETSSLEPMN ARLDDVGLAD VLPPLSESFD 240
LDSLMSTPMS SPRQNSIEAE TNSSTFFDFG IPEDFILDDF MF
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| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion. |
| UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
| Function -- GeneRIF ? help
Back to Top |
- AtMyb41 is involved in distinct cellular processes, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress.
[PMID: 19211694] - These results indicate that the phosphorylation of MYB41 by MPK6 is required for the biological function of MYB41 in salt tolerance.
[PMID: 22575450] - implicate AtMYB41 in the production of aliphatic suberin under abiotic stress conditions
[PMID: 25060192]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519610 | 0.0 | AY519610.1 Arabidopsis thaliana MYB transcription factor (At4g28110) mRNA, complete cds. |
| GenBank | BT001930 | 0.0 | BT001930.1 Arabidopsis thaliana clone C103440 putative myb family transcription factor (At4g28110) mRNA, complete cds. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana.
Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
[PMID:11597504] - Maruyama-Nakashita A,Inoue E,Watanabe-Takahashi A,Yamaya T,Takahashi H
Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways.
Plant Physiol., 2003. 132(2): p. 597-605
[PMID:12805590] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
[PMID:17722694] - Cominelli E,Sala T,Calvi D,Gusmaroli G,Tonelli C
Over-expression of the Arabidopsis AtMYB41 gene alters cell expansion and leaf surface permeability.
Plant J., 2008. 53(1): p. 53-64
[PMID:17971045] - Lippold F, et al.
AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis.
Plant Physiol., 2009. 149(4): p. 1761-72
[PMID:19211694] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map.
Science, 2011. 333(6042): p. 601-7
[PMID:21798944] - Hoang MH, et al.
Phosphorylation by AtMPK6 is required for the biological function of AtMYB41 in Arabidopsis.
Biochem. Biophys. Res. Commun., 2012. 422(1): p. 181-6
[PMID:22575450] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Li-Beisson Y, et al.
Acyl-lipid metabolism.
Arabidopsis Book, 2013. 11: p. e0161
[PMID:23505340] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kosma DK, et al.
AtMYB41 activates ectopic suberin synthesis and assembly in multiple plant species and cell types.
Plant J., 2014. 80(2): p. 216-29
[PMID:25060192] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178]
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