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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G25610.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 571aa MW: 64614.8 Da PI: 9.6328 | ||||||||
Description | C2H2-like zinc finger protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H AT4G25610.2 62 KCEKCSREFCSPVNFRRHNRMH 83 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.928 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENTPVQLFQ LLHTLERPGW PLLTPLKIQM 60 QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDFGKERDAL GAFWNKLSAT DAKEILSVKS 120 MMLEDIPGAS VESGLMSLIE KPGYTALPQY YLRAGSGLLD LLQARPPRLP ISSQELFSIL 180 DDASEKTFLS SEAAPMQKYI FDGEIGKTVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL 240 RCQNLLVEEE EAARRRKAEL LERKKRKKLR QKEQREKDQK KDAKEDESTT SEEQQYPAEP 300 SSPLSVASDS EAQTPDSLPI DDSSSLEEPQ VLETNNGRNS ETQVPMVDGL DNGQNMERRS 360 GRRQMQRSQQ GMPNGFHADH APNLGGMRKN GTNRDARANT TKVWSRKSDN PKLISQHAAV 420 TQQDQTKSSE FIVGSLSVSI RNSGEHNQTK CSEGERRTKT VEVKPASEQS TVKIWRPVSS 480 QGRKTSTVNG NTDKEDKRSN PTTPEVKNAH HISLQFNNHE AKAFLAKSNL CRTRDIGSVS 540 GNRHLRQQHS RGTKVYQKCS VSERDRYFLC F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 267 | RRRKAELLERKKRKK |
2 | 261 | 268 | ERKKRKKL |
3 | 263 | 267 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.69894 | 0.0 | root| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145344309 | 0.0 | ||||
Genevisible | 245230_at | 0.0 | ||||
Expression Atlas | AT4G25610 | - | ||||
AtGenExpress | AT4G25610 | - | ||||
ATTED-II | AT4G25610 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G25610.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G25610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY081294 | 0.0 | AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds. | |||
GenBank | BT000386 | 0.0 | BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001154268.1 | 0.0 | C2H2-like zinc finger protein | ||||
TrEMBL | F4JTA8 | 0.0 | F4JTA8_ARATH; C2H2-like zinc finger protein | ||||
STRING | AT4G25610.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G25610.2 |
Entrez Gene | 828666 |
iHOP | AT4G25610 |
wikigenes | AT4G25610 |
Publications ? help Back to Top | |||
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