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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT4G18450.1 |
Common Name | ERF091, F28J12.110 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
ERF |
Protein Properties |
Length: 303aa MW: 34494.5 Da PI: 4.8027 |
Description |
ERF family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr ++ +g+++AeIrd + ng r++lg+f taeeAa a+++a+ +++g
AT4G18450.1 109 KYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 159
8********.**********44465..************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009873 | Biological Process | ethylene-activated signaling pathway |
GO:0010200 | Biological Process | response to chitin |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MAFGNIQELD GEILKNVWAN YIGTPQTDTR SIQVPEVSRT WEALPTLDDI PEGSREMLQS 60 LDMSTEDQEW TEILDAIASF PNKTNHDPLT NPTIDSCSLS SRVSCKTRKY RGVRKRPWGK 120 FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT QKAHTNFQLE TVIKAMEMDC 180 NPNYYRMNNS NTSDPLRSSR KIGLRTGKEA VKAYDEVVDG MVENHCALSY CSTKEHSETR 240 GLRGSEETWF DLRKRRRSNE DSMCQEVEMQ KTVTGEETVC DVFGLFEFED LGSDYLETLL 300 SSF
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 252 | 256 | RKRRR |
2 | 252 | 257 | RKRRRS |
Functional Description ? help
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Source |
Description |
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL021710 | 0.0 | AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project). |
GenBank | AL161548 | 0.0 | AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Publications
? help Back to Top |
- Fujimoto SY,Ohta M,Usui A,Shinshi H,Ohme-Takagi M
Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell, 2000. 12(3): p. 393-404 [PMID:10715325] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Wang J, et al.
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics, 2006. 172(1): p. 507-17 [PMID:16172500] - McGrath KC, et al.
Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiol., 2005. 139(2): p. 949-59 [PMID:16183832] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] - Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11 [PMID:17722694] - Ou B, et al.
A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation. Mol Plant, 2011. 4(3): p. 546-55 [PMID:21343311] - Riechmann JL,Meyerowitz EM
The AP2/EREBP family of plant transcription factors. Biol. Chem., 1998. 379(6): p. 633-46 [PMID:9687012]
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