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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT4G17710.1 |
Common Name | dl4890c, FCAALL.102, HDG4, HDGL2-4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 709aa MW: 79277.3 Da PI: 6.6254 |
Description |
homeodomain GLABROUS 4 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.7 | 1.9e-18 | 89 | 144 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++++e+lF++n +p++++r +L+kklgL+ qVk+WFqN+R++ k
AT4G17710.1 89 KKRYHRHTASQIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIK 144
688999**********************************************9877 PP
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2 | START | 137.6 | 1.3e-43 | 238 | 463 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83
ela ++a+el k+ + +ep+W k + +n+ ++l ++e +k ++ ea+ra +v ++ +lv+ +ld +W+e++ +a+t +
AT4G17710.1 238 ELAVSCARELAKMCDINEPLWNKKR-LDNESVCLNEEEYKKMflwplmndddrFRREASRANAVIMLNCITLVKAFLDAD-KWSEMFFpivsSAKTAQ 333
578899******************9.6777777777777777999999**9999**************************.******99999****** PP
EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
START 84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdl 172
issg g+l lm+aelq+ splvp R+ +f+Ry +q ++g+w++vd +d ++ + + ++ R pSg++i+ + ng+s+vtwvehv++
AT4G17710.1 334 IISSGasgpsGTLLLMFAELQVVSPLVPtREAYFLRYVEQnAEEGKWMVVDFPIDRIKPASAttTDQYRR---KPSGCIIQAMRNGYSQVTWVEHVEV 428
***************************************************9999888777554566666...************************* PP
-SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
+++++ ++++r +v+sg+a+ga +w++ l+rqce+
AT4G17710.1 429 EEKHVqDEVVREFVESGVAFGAERWLSVLKRQCER 463
*****99**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005515 | Molecular Function | protein binding |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 709 aa
Download sequence Send
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METKDKKEKG HMVLNSDNVF GSVSSSPTTT IQNPNYFTSF ENPNFPYIFP KEEYEVMSKI 60 ESGSGKSTGS GHDPVENTAI EQEPPAAKKK RYHRHTASQI QQMEALFKEN AHPDTKTRLR 120 LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST 180 CGHNLRLENA RLRQELDRLR SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA 240 VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV 300 IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV 360 PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ YRRKPSGCII QAMRNGYSQV 420 TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS 480 VEARKNLMKL SQRMVKTFCL NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH 540 QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML 600 QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP 660 SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT SALVNDVGN
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY133700 | 0.0 | AY133700.1 Arabidopsis thaliana clone C103238 putative GLABRA2 protein (At4g17710) mRNA, complete cds. |
Publications
? help Back to Top |
- Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2. Plant Mol. Biol., 2000. 42(5): p. 703-17 [PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol., 2004. 5(6): p. R41 [PMID:15186492] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Plant Physiol., 2006. 141(4): p. 1363-75 [PMID:16778018] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944]
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