 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT4G16150.1 |
| Common Name | CMTA5, dl4115W, FCAALL.291, SR6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
CAMTA |
| Protein Properties |
Length: 923aa MW: 104847 Da PI: 7.3904 |
| Description |
calmodulin binding;transcription regulators |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CG-1 | 162.4 | 8.1e-51 | 30 | 146 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99
+e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+e++ptf rrcy
AT4G16150.1 30 DEaYSRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDTPTFVRRCY 127
45589********************************************************************************************* PP
CG-1 100 wlLeeelekivlvhylevk 118
wlL++++e+ivlvhy+e++
AT4G16150.1 128 WLLDKSQEHIVLVHYRETH 146
****************985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 923 aa
Download sequence Send
to blast |
MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYSRWLRPN EIHALLCNHK FFTINVKPVN 60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGEDTP 120
TFVRRCYWLL DKSQEHIVLV HYRETHEVHA APATPGNSYS SSITDHLSPK IVAEDTSSGV 180
HNTCNTGFEV RSNSLGSRNH EIRLHEINTL DWDELLVPAD ISNQSHPTEE DMLYFTEQLQ 240
TAPRGSVKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHSH CGVDPNLQRR 300
DFSATVTDQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVYT PGQDSSTPPT 360
VFHSHSDIPE QVFNITDVSP AWAYSTEKTK ILVTGFFHDS FQHLGRSNLI CICGELRVPA 420
EFLQMGVYRC FLPPQSPGVV NLYLSVDGNK PISQLFSFEH RSVQFIEKAI PQDDQLYKWE 480
EFEFQVRLAH LLFTSSNKIS VLTSKISPEN LLEAKKLASR TSHLLNSWAY LMKSIQANEV 540
PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW 600
ANISLDFRDK QGWTALHWAA YYGREKMVAA LLSAGARPNL VTDPTKEFLG GCTAADLAQQ 660
KGYDGLAAFL AEKCLVAQFK DMQTAGNISG NLETIKAEKS SNPGNANEEE QSLKDTLAAY 720
RTAAEAAARI QGAFREHELK VRSSAVRFAS KEEEAKNIIA AMKIQHAFRN FEVRRKIAAA 780
ARIQYRFQTW KMRREFLNMR KKAIRIQAAF RGFQVRRQYQ KITWSVGVLE KAILRWRLKR 840
KGFRGLQVSQ PDEKEGSEAV EDFYKTSQKQ AEERLERSVV KVQAMFRSKK AQQDYRRMKL 900
AHEEAQLEYD GMQELDQMAT EES
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY128295 | 0.0 | AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds. |
| Publications
? help Back to Top |
- Reddy VS,Ali GS,Reddy AS
Genes encoding calmodulin-binding proteins in the Arabidopsis genome.
J. Biol. Chem., 2002. 277(12): p. 9840-52
[PMID:11782485] - Bouch
A novel family of calmodulin-binding transcription activators in multicellular organisms.
J. Biol. Chem., 2002. 277(24): p. 21851-61
[PMID:11925432] - Menges M,Hennig L,Gruissem W,Murray JA
Cell cycle-regulated gene expression in Arabidopsis.
J. Biol. Chem., 2002. 277(44): p. 41987-2002
[PMID:12169696] - Yang T,Poovaiah BW
A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants.
J. Biol. Chem., 2002. 277(47): p. 45049-58
[PMID:12218065] - Mitsuda N,Isono T,Sato MH
Arabidopsis CAMTA family proteins enhance V-PPase expression in pollen.
Plant Cell Physiol., 2003. 44(10): p. 975-81
[PMID:14581622] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Choi MS, et al.
Isolation of a calmodulin-binding transcription factor from rice (Oryza sativa L.).
J. Biol. Chem., 2005. 280(49): p. 40820-31
[PMID:16192280] - Ye J, et al.
Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
Plant Cell, 2009. 21(12): p. 3868-84
[PMID:20023198] - Wang C, et al.
Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification.
Mol. Cell Proteomics, 2013. 12(12): p. 3653-65
[PMID:24019147] - Kidokoro S, et al.
Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
Plant Cell, 2017. 29(4): p. 760-774
[PMID:28351986] - Lan Y,Liu X,Fu Y,Huang S
Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
PLoS Genet., 2018. 14(11): p. e1007789
[PMID:30418966]
|
