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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT4G15250.1 |
| Common Name | BBX9, COL11, dl3670c |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
CO-like |
| Protein Properties |
Length: 330aa MW: 36619.1 Da PI: 4.9772 |
| Description |
B-box type zinc finger protein with CCT domain |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 26.1 | 1.7e-08 | 2 | 45 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
e +C+ ++ +++ ++C++++ lC +C ++ H+ Ht++
AT4G15250.1 2 EARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSAnplsqrHTRS 45
579******99*********************667888888875 PP
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| 2 | CCT | 60.7 | 4.7e-21 | 276 | 319 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+
AT4G15250.1 276 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSG 319
99***************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MEARCDFCGT EKALIYCKSD SAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CSLQPTAVHC 60
MNENVSLCQG CQWTASNCTG LGHRLQSLNP YSDCPSPSDF GKIWSSTLEP SVTSLVSPFS 120
DTLLQELDDW NGSSTSVVTQ TQNLKDYSSF FPMESNLPKV IEEECSGLDL CEGINLDDAP 180
LNFNASNDII GCSSLDNTKC YEYEDSFKEE NNIGLPSLLL PTLSGNVVPN MSLSMSNLTG 240
ESNATDYQDC GISPGFLIGD SPWESNVEVS FNPKLRDEAK KRYKQKKSKR MFGKQIRYAS 300
RKARADTRKR VKGRFVKSGE TFEYDPSLVM
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL161541 | 0.0 | AL161541.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41. |
| GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
| GenBank | Z97338 | 0.0 | Z97338.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Robson F, et al.
Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants.
Plant J., 2001. 28(6): p. 619-31
[PMID:11851908] - Griffiths S,Dunford RP,Coupland G,Laurie DA
The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis.
Plant Physiol., 2003. 131(4): p. 1855-67
[PMID:12692345] - Becker JD,Boavida LC,Carneiro J,Haury M,Feij
Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome.
Plant Physiol., 2003. 133(2): p. 713-25
[PMID:14500793] - Mandaokar A, et al.
Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling.
Plant J., 2006. 46(6): p. 984-1008
[PMID:16805732] - Khanna R, et al.
The Arabidopsis B-box zinc finger family.
Plant Cell, 2009. 21(11): p. 3416-20
[PMID:19920209] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474]
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