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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G10240.1 | ||||||||
Common Name | bbx23, DBB4, F24G24.40, STH6, T9A4.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | DBB | ||||||||
Protein Properties | Length: 162aa MW: 17859 Da PI: 4.7344 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.4 | 9.2e-06 | 4 | 45 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +e+ e++ C +++ lC+ C + H+ H+v AT4G10240.1 4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnklfqrhHRV 45 7*****************************767888884444 PP | |||||||
2 | zf-B_box | 29.3 | 1.7e-09 | 60 | 97 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38 ++ C+ ++e + +fC +++ +lC+dC +++H ++H+ AT4G10240.1 60 APLCDICQERKGYFFCLEDRAMLCNDCDEAIHtcNSHQ 97 689******99********************9434487 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.883 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.66E-4 | 3 | 47 | No hit | No description |
SMART | SM00336 | 3.5E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.584 | 58 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-12 | 58 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-7 | 60 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.78E-7 | 61 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009032 | anatomy | petal | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA 60 PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL LSGVQVSDQS LTENSECSTS 120 FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30681373 | 0.0 | ||||
Genevisible | 255805_at | 0.0 | ||||
Expression Atlas | AT4G10240 | - | ||||
AtGenExpress | AT4G10240 | - | ||||
ATTED-II | AT4G10240 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G10240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G10240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY122916 | 0.0 | AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192762.1 | 1e-116 | B-box zinc finger family protein | ||||
Swissprot | O82617 | 1e-117 | BBX23_ARATH; B-box zinc finger protein 23 | ||||
TrEMBL | A0A178UTH9 | 1e-115 | A0A178UTH9_ARATH; Bbx23 | ||||
STRING | AT4G10240.1 | 1e-116 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12502 | 24 | 30 | Representative plant | OGRP1804 | 16 | 34 |
Link Out ? help Back to Top | |
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Phytozome | AT4G10240.1 |
Entrez Gene | 826615 |
iHOP | AT4G10240 |
wikigenes | AT4G10240 |