PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 166aa MW: 19215.8 Da PI: 9.3426

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G04580.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.2	3.2e-27	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr++Wt +L rF++++e+LGG+e AtPk+il lm+v +Lt++hvkSHLQ+YR AT4G04580.1 15 PRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYRN 68 9****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-25	11	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.808	11	71	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	13	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-27	14	70	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-9	16	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MQDPMVRSYI RSDNPRMHWT DDLDIRFIQV IEKLGGEESA TPKRILSLMG VRDLTISHVK 60 SHLQMYRNKK KEESSKEIKM MREMTQRQSQ QYLQIYERAT QFIQNQQRLQ LDNTEKITPV 120 LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA TGEEELSLEL TLGRKY

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18412612	0.0
Expression Atlas	AT4G04580	-
AtGenExpress	AT4G04580	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G04580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G04580

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF074021	7e-58	AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBank	AL161501	7e-58	AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBank	CP002687	7e-58	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_192367.1	1e-120	Homeodomain-like superfamily protein
TrEMBL	A0A178USM1	1e-118	A0A178USM1_ARATH; Uncharacterized protein
TrEMBL	Q9XEB2	1e-118	Q9XEB2_ARATH; Homeodomain-like superfamily protein
STRING	AT4G04580.1	1e-119	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184
Representative plant	OGRP285	15	123

Link Out ? help Back to Top
Phytozome	AT4G04580.1
Entrez Gene	825790
iHOP	AT4G04580
wikigenes	AT4G04580

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137]