PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G02235.1 | ||||||||
Common Name | AGL51, T2H3.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22478.4 Da PI: 10.1859 | ||||||||
Description | AGAMOUS-like 51 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 2.1e-26 | 7 | 56 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s++++++++R+++i+KKAeELS+LC+++v+vi+++++g+l+++++ AT4G02235.1 7 SSSSSSRNSTSLTNRLKTIFKKAEELSILCAIDVCVIYYGPDGELRTWPK 56 6899********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-4 | 5 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.442 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-14 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-15 | 12 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.58E-15 | 21 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MKQSSFSSSS SSRNSTSLTN RLKTIFKKAE ELSILCAIDV CVIYYGPDGE LRTWPKERNT 60 VKDMASRYKE ATKRKKKRTL STLQERLRIV ESQKQQNKNL VHQSLTPSYL NQIQHLNPSN 120 FSPYMYNHGD AATLSQLPLS ASLSNQLQLP ESLDAAWFWS EHVFGQHHQQ QQLSTSWRVK 180 HTRILTVSFG TSICSE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G02235 | |||||
AtGenExpress | AT4G02235 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G02235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G02235 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141215 | 0.0 | AY141215.1 Arabidopsis thaliana MADS-box protein AGL51 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_974500.1 | 1e-145 | AGAMOUS-like 51 | ||||
Swissprot | Q9FLL0 | 2e-39 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A178UXV6 | 1e-143 | A0A178UXV6_ARATH; AGL51 | ||||
TrEMBL | O81421 | 1e-143 | O81421_ARATH; AGAMOUS-like 51 | ||||
STRING | AT4G02235.1 | 1e-144 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 | Representative plant | OGRP6766 | 2 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT4G02235.1 |
Entrez Gene | 2745602 |
iHOP | AT4G02235 |
wikigenes | AT4G02235 |
Publications ? help Back to Top | |||
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