PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 22478.4 Da PI: 10.1859

Description

AGAMOUS-like 51

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G02235.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.9	2.1e-26	7	56	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s++++++++R+++i+KKAeELS+LC+++v+vi+++++g+l+++++ AT4G02235.1 7 SSSSSSRNSTSLTNRLKTIFKKAEELSILCAIDVCVIYYGPDGELRTWPK 56 6899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.8E-4	5	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.442	10	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-14	10	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-15	12	80	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.58E-15	21	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MKQSSFSSSS SSRNSTSLTN RLKTIFKKAE ELSILCAIDV CVIYYGPDGE LRTWPKERNT 60 VKDMASRYKE ATKRKKKRTL STLQERLRIV ESQKQQNKNL VHQSLTPSYL NQIQHLNPSN 120 FSPYMYNHGD AATLSQLPLS ASLSNQLQLP ESLDAAWFWS EHVFGQHHQQ QQLSTSWRVK 180 HTRILTVSFG TSICSE

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT4G02235
AtGenExpress	AT4G02235

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G02235.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G02235

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY141215	0.0	AY141215.1 Arabidopsis thaliana MADS-box protein AGL51 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_974500.1	1e-145	AGAMOUS-like 51
Swissprot	Q9FLL0	2e-39	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A178UXV6	1e-143	A0A178UXV6_ARATH; AGL51
TrEMBL	O81421	1e-143	O81421_ARATH; AGAMOUS-like 51
STRING	AT4G02235.1	1e-144	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126
Representative plant	OGRP6766	2	18

Link Out ? help Back to Top
Phytozome	AT4G02235.1
Entrez Gene	2745602
iHOP	AT4G02235
wikigenes	AT4G02235

Publications ? help Back to Top
Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]