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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT4G01540.2 |
| Common Name | ANAC068, NTM1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
NAC |
| Protein Properties |
Length: 423aa MW: 48236.8 Da PI: 6.2436 |
| Description |
NAC with transmembrane motif1 |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 126.3 | 2.4e-39 | 6 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykveP.wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95
G+rF+Pt ee++++yLk+k+ gk ++e+i+e++i++++P +dLpk ++++e+ ewyfFs+ + +++++ + +r+t sg+Wk tg d+e+ +k
AT4G01540.2 6 IGYRFSPTGEEVINHYLKNKLLGKYWLVDEAISEINILSHKPsKDLPKlaRIQSEDLEWYFFSPIEYTNPNKMKMKRTTGSGFWKPTGVDREIRDKrg 103
69***********************999999***********558995458888888**************************************977 PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g ++g+kktLv+++g++p+g++t Wvmhey++
AT4G01540.2 104 NGVVIGIKKTLVYHEGKSPHGVRTPWVMHEYHI 136
7888***************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009736 | Biological Process | cytokinin-activated signaling pathway |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051302 | Biological Process | regulation of cell division |
| GO:0005789 | Cellular Component | endoplasmic reticulum membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0031965 | Cellular Component | nuclear membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MMKGLIGYRF SPTGEEVINH YLKNKLLGKY WLVDEAISEI NILSHKPSKD LPKLARIQSE 60
DLEWYFFSPI EYTNPNKMKM KRTTGSGFWK PTGVDREIRD KRGNGVVIGI KKTLVYHEGK 120
SPHGVRTPWV MHEYHITCLP HHKRKYVVCQ VKYKGEAAEI SYEPSPSLVS DSHTVIAITG 180
EPEPELQVEQ PGKENLLGMS VDDLIEPMNQ QEEPQGPHLA PNDDEFIRGL RHVDRGTVEY 240
LFANEENMDG LSMNDLRIPM IVQQEDLSEW EGFNADTFFS DNNNNYNLNV HHQLTPYGDG 300
YLNAFSGYNE GNPPDHELVM QENRNDHMPR KPVTGTIDYS SDSGSDAGSI STTVKQEIPR 360
AVDAPMNNES SLVKTEKKGL FIVEDAMERN RKKPRFIYLM KMIIGNIISV LLPVKRLIPV 420
KKL
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| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1). NTM1 regulates cell division in Arabidopsis. |
| UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. |
| Function -- GeneRIF ? help
Back to Top |
- Membrane-bound transcription factor, NTM1 (for NAC with transmembrane motif1), that belongs to the plant-specific NAC transcription factor family controls cell division in Arabidopsis.[NTM1]
[PMID: 17098812] - Data suggest that the reduced growth observed in the ntm1-D mutant is caused by enhancement of its stress responses, possibly resulting in a cost in fitness.
[PMID: 18319616] - CRWN1 represses PR1 transcription by interacting with NTL9
[PMID: 28943325]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493671 | 0.0 | AB493671.1 Arabidopsis thaliana At4g01540 mRNA for hypothetical protein, partial cds, clone: RAAt4g01540. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Ooka H, et al.
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
DNA Res., 2003. 10(6): p. 239-47
[PMID:15029955] - Scheible WR, et al.
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
Plant Physiol., 2004. 136(1): p. 2483-99
[PMID:15375205] - Kim YS, et al.
A membrane-bound NAC transcription factor regulates cell division in Arabidopsis.
Plant Cell, 2006. 18(11): p. 3132-44
[PMID:17098812] - Lee KH,Kim YS,Park CM,Kim HJ
Proteomic identification of differentially expressed proteins in Arabidopsis mutant ntm1-D with disturbed cell division.
Mol. Cells, 2008. 25(1): p. 70-7
[PMID:18319616] - Kim YS,Park CM
Membrane regulation of cytokinin-mediated cell division in Arabidopsis.
Plant Signal Behav, 2007. 2(1): p. 15-6
[PMID:19704799] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178] - Guo T, et al.
Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
Mol Plant, 2017. 10(10): p. 1334-1348
[PMID:28943325]
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