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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT4G00870.1 |
| Common Name | A_TM018A10.7, BHLH14, EN33, T18A10.17 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 423aa MW: 47732.7 Da PI: 7.7291 |
| Description |
bHLH family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.7 | 9e-13 | 249 | 294 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+E++RR+++N++f Lr ++Pk +++Ka+ L Av YI sL
AT4G00870.1 249 SHVEAEKQRREKLNHRFYALRAIVPKV-----SRMDKASLLSDAVSYIESL 294
799***********************6.....4****************99 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF 60
DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD GGDDLELFYA ASFYGEDRSP 120
RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN 180
FINRVKSIFG SGKTTKHTNQ TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK 240
EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD 300
LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV 360
QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV VLVPEGLRSE DRLRTTLVRT 420
LSL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_B | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_E | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_F | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_G | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_I | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_M | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| 5gnj_N | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 222 | 229 | ERKRRRKL |
| 2 | 223 | 227 | RKRRR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ519812 | 0.0 | AJ519812.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
J. Biol. Chem., 2004. 279(2): p. 1060-9
[PMID:14576160] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Plant Cell, 2003. 15(11): p. 2497-502
[PMID:14600211] - Hu W,Wang Y,Bowers C,Ma H
Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis.
Plant Mol. Biol., 2003. 53(4): p. 545-63
[PMID:15010618] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Elrouby N,Coupland G
Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes.
Proc. Natl. Acad. Sci. U.S.A., 2010. 107(40): p. 17415-20
[PMID:20855607] - Tominaga-Wada R,Iwata M,Nukumizu Y,Wada T
Analysis of IIId, IIIe and IVa group basic-helix-loop-helix proteins expressed in Arabidopsis root epidermis.
Plant Sci., 2011. 181(4): p. 471-8
[PMID:21889054] - Kundu N,Dozier U,Deslandes L,Somssich IE,Ullah H
Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins.
Plant Signal Behav, 2013. 8(5): p. e24012
[PMID:23435172] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Song S, et al.
The bHLH subgroup IIId factors negatively regulate jasmonate-mediated plant defense and development.
PLoS Genet., 2013. 9(7): p. e1003653
[PMID:23935516] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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