 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT4G00730.1 |
| Common Name | AHDP, ANL2, F6N23.10 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 802aa MW: 87194.2 Da PI: 6.1585 |
| Description |
HD-ZIP family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 65.6 | 6.8e-21 | 135 | 190 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
AT4G00730.1 135 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190
688999***********************************************999 PP
|
| 2 | START | 216.7 | 7.9e-68 | 324 | 543 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88
ela++a++elvk+a++eep+Wvks +++n+de++++f+++k +ea+r+sg+v+ ++ lve+l+d++ +W+e+++ +a+t++vis g
AT4G00730.1 324 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSSTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDVISGG 420
5899*************************************9999999***************************.********************** PP
......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++++ ++v+R +lpSg++++++sng+skvtwveh++++++++h+
AT4G00730.1 421 magtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGAPVIR--RLPSGCVVQDVSNGYSKVTWVEHAEYDENQIHQ 516
********************************************************9******..********************************* PP
HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 180 llrslvksglaegaktwvatlqrqcek 206
l+r+l++sgl +g ++w+atlqrqce+
AT4G00730.1 517 LYRPLLRSGLGFGSQRWLATLQRQCEC 543
*************************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009827 | Biological Process | plant-type cell wall modification |
| GO:0042335 | Biological Process | cuticle development |
| GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light |
| GO:0048765 | Biological Process | root hair cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 802 aa
Download sequence Send
to blast |
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY 60
ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV NRRSREEEHE SRSGSDNVEG 120
ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF 180
WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE 240
HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG 300
GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY 360
MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW TEMFPCNVAR ATTTDVISGG 420
MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP 480
VIRRLPSGCV VQDVSNGYSK VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ 540
CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD 600
PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ 660
EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG ALVVYAPVDI PAMHVVMNGG 720
DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV 780
ETVNNLISCT VQKIRAALQC ES
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development |
| UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
| Function -- GeneRIF ? help
Back to Top |
- In plants with an ANL2 gene mutation, extra (intervening) cells develop from epidermal cells but become cortical in nature, and expression of some epidermis-specific genes is abnormal.
[PMID: 21421418] - ANTHOCYANINLESS2 (ANL2), a gene involved in the regulation of cell wall mechanical properties, was identified.
[PMID: 26720211]
|
| Phenotype -- Disruption Phenotype ? help
Back to Top |
| Source |
Description |
| UniProt | DISRUPTION PHENOTYPE: Plants display a strong reduction of anthocyanin content on the adaxial side of rosette leaves, a slight reduction onf the abaxial side, and extra cells between cortical and epidermal layers in roots. {ECO:0000269|PubMed:10402424}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226968 | 0.0 | AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10. |
| Publications
? help Back to Top |
- Kubo H,Peeters AJ,Aarts MG,Pereira A,Koornneef M
ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis.
Plant Cell, 1999. 11(7): p. 1217-26
[PMID:10402424] - Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2.
Plant Mol. Biol., 2000. 42(5): p. 703-17
[PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Vlieghe K, et al.
Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation.
J. Cell. Sci., 2003. 116(Pt 20): p. 4249-59
[PMID:12953064] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
J. Biol. Chem., 2004. 279(2): p. 1060-9
[PMID:14576160] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors.
Genome Biol., 2004. 5(6): p. R41
[PMID:15186492] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Solfanelli C,Poggi A,Loreti E,Alpi A,Perata P
Sucrose-specific induction of the anthocyanin biosynthetic pathway in Arabidopsis.
Plant Physiol., 2006. 140(2): p. 637-46
[PMID:16384906] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis.
Plant Physiol., 2006. 141(4): p. 1363-75
[PMID:16778018] - Lindqvist C, et al.
An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers.
BMC Plant Biol., 2006. 6: p. 16
[PMID:16928278] - Sivitz AB,Reinders A,Ward JM
Arabidopsis sucrose transporter AtSUC1 is important for pollen germination and sucrose-induced anthocyanin accumulation.
Plant Physiol., 2008. 147(1): p. 92-100
[PMID:18359840] - Hanada K, et al.
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
Mol. Biol. Evol., 2011. 28(1): p. 377-82
[PMID:20736450] - Kubo H,Hayashi K
Characterization of root cells of anl2 mutant in Arabidopsis thaliana.
Plant Sci., 2011. 180(5): p. 679-85
[PMID:21421418] - Nadakuduti SS, et al.
Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato.
Plant Physiol., 2012. 159(3): p. 945-60
[PMID:22623518] - Mabuchi A,Soga K,Wakabayashi K,Hoson T
Phenotypic screening of Arabidopsis T-DNA insertion lines for cell wall mechanical properties revealed ANTHOCYANINLESS2, a cell wall-related gene.
J. Plant Physiol., 2016. 191: p. 29-35
[PMID:26720211] - Lu P,Porat R,Nadeau JA,O'Neill SD
Identification of a meristem L1 layer-specific gene in Arabidopsis that is expressed during embryonic pattern formation and defines a new class of homeobox genes.
Plant Cell, 1996. 8(12): p. 2155-68
[PMID:8989876]
|
