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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT3G61150.1 |
Common Name | HDG1, HD-GL2-1, HDGL2-1, T20K12.50 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 808aa MW: 88166.7 Da PI: 6.6855 |
Description |
homeodomain GLABROUS 1 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.2 | 7.6e-20 | 111 | 166 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
AT3G61150.1 111 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 166
688999***********************************************999 PP
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2 | START | 186.7 | 1.2e-58 | 320 | 538 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86
la++a++elvk+a+ +ep+Wv+ss e +n++e+ ++f++ + + +ea+++ g v+ ++ lve+l+d+ +W e+++ + +t+e is
AT3G61150.1 320 LALAAMDELVKMAQTREPLWVRSSdsgfEVLNQEEYDTSFSRCVGpkqdgFVSEASKEAGTVIINSLALVETLMDSE-RWAEMFPsmvsRTSTTEIIS 416
6899********************99**66666666666654333666789**************************.*******9999********* PP
TT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
START 87 sg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
sg gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R lpSg+l+++++ng+skvtw+eh++++++++h
AT3G61150.1 417 SGmggrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEHTEYDENHIH 510
********************************************************9.777766...******************************* PP
HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 179 wllrslvksglaegaktwvatlqrqcek 206
l+r+l++ gla+ga +w+a+lqrqce+
AT3G61150.1 511 RLYRPLLRCGLAFGAHRWMAALQRQCEC 538
**************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 808 aa
Download sequence Send
to blast |
MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN 60 GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD LDTSDRPLKK KKRYHRHTPK 120 QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE 180 NDKLRAENMS VREAMRNPMC GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF 240 LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV 300 NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS 360 RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE MFPSMVSRTS TTEIISSGMG 420 GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL 480 PSGCLVQDMA NGYSKVTWIE HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT 540 ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR 600 IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH 660 IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV VVYAPVDIPA MQAVMNGGDS 720 AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL 780 TVESVETVNN LISCTVQKIK AALHCDST
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help
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- Rice and Arabidopsis CFL1 negatively regulate cuticle development by affecting the function of HDG1, which regulates the downstream genes BDG and FDH.
[PMID: 21954461] - Data suggest that presence of mediator complex subunits MED10a, MED28, and MED32 or changes in redox state affect DNA-binding capacity of GeBPL (GLABROUS1/GL1 enhancer-binding protein-like) at likely GLABROUS1/GL1 promoter.
[PMID: 25877331]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY050866 | 0.0 | AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds. |
GenBank | AY096757 | 0.0 | AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds. |
Publications
? help Back to Top |
- Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2. Plant Mol. Biol., 2000. 42(5): p. 703-17 [PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol., 2004. 5(6): p. R41 [PMID:15186492] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Truman W,de Zabala MT,Grant M
Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. Plant J., 2006. 46(1): p. 14-33 [PMID:16553893] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Plant Physiol., 2006. 141(4): p. 1363-75 [PMID:16778018] - Borges F, et al.
Comparative transcriptomics of Arabidopsis sperm cells. Plant Physiol., 2008. 148(2): p. 1168-81 [PMID:18667720] - Jakoby MJ, et al.
Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. Plant Physiol., 2008. 148(3): p. 1583-602 [PMID:18805951] - Wuest SE, et al.
Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol., 2010. 20(6): p. 506-12 [PMID:20226671] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Wu R, et al.
CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis. Plant Cell, 2011. 23(9): p. 3392-411 [PMID:21954461] - Li-Beisson Y, et al.
Acyl-lipid metabolism. Arabidopsis Book, 2013. 11: p. e0161 [PMID:23505340] - Kamata N,Okada H,Komeda Y,Takahashi T
Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana. Plant J., 2013. 75(3): p. 430-40 [PMID:23590515] - We
Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life. Cell Host Microbe, 2014. 16(3): p. 364-75 [PMID:25211078] - Horstman A, et al.
AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655] - Shaikhali J, et al.
Biochemical and redox characterization of the mediator complex and its associated transcription factor GeBPL, a GLABROUS1 enhancer binding protein. Biochem. J., 2015. 468(3): p. 385-400 [PMID:25877331] - Tichtinsky G, et al.
An evolutionary conserved group of plant GSK-3/shaggy-like protein kinase genes preferentially expressed in developing pollen. Biochim. Biophys. Acta, 1998. 1442(2-3): p. 261-73 [PMID:9804971]
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