PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 142aa MW: 16291.3 Da PI: 8.8307

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G53820.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + Fs+ L H++ H AT3G53820.1 21 YICEFCERGFSNAQALGGHMNIH 43 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.4E-6	17	47	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.43E-7	18	47	No hit	No description
PROSITE profile	PS50157	11.24	21	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MNRKYLDRRS YSWSGSQARP YICEFCERGF SNAQALGGHM NIHRKDRAKL RQANLKEEDS 60 EDAICTTSRN RFGQELIELP FFVDTVGPRR KGEDDKSEKG LGDEEKKNMR ILQKALSQSA 120 DVIDLELRLG LDPYKKTTST ST

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18409927	0.0
Genevisible	251911_at	0.0
Expression Atlas	AT3G53820	-
AtGenExpress	AT3G53820	-
ATTED-II	AT3G53820	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G53820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G53820

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132960	0.0	AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	DQ056622	0.0	DQ056622.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At3g53820) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_190950.1	1e-103	C2H2 and C2HC zinc fingers superfamily protein
TrEMBL	A0A384L7J9	1e-101	A0A384L7J9_ARATH; Uncharacterized protein
TrEMBL	Q9M344	1e-101	Q9M344_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRING	AT3G53820.1	1e-102	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6991	23	41
Representative plant	OGRP1998	11	33

Link Out ? help Back to Top
Phytozome	AT3G53820.1
Entrez Gene	824549
iHOP	AT3G53820
wikigenes	AT3G53820

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Englbrecht CC,Schoof H,B Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics, 2004. 5(1): p. 39 [PMID:15236668]