PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G53790.1 | ||||||||
Common Name | F5K20.90, TRFL4, TRP6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 354aa MW: 39606.5 Da PI: 9.816 | ||||||||
Description | TRF-like 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 269 | 318 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + ++ ++Rt ++k++w ++ AT3G53790.1 269 RRPFTVSEVEALVQAVERLGTGRWRDVKSHAFnhvNHRTYVDLKDKWKTL 318 679**************************9988999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 8.96E-6 | 121 | 194 | IPR029071 | Ubiquitin-related domain |
CDD | cd01769 | 4.11E-4 | 131 | 191 | No hit | No description |
PROSITE profile | PS51294 | 16.19 | 264 | 323 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-16 | 266 | 353 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-8 | 268 | 321 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-6 | 269 | 318 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-12 | 269 | 319 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.34E-17 | 270 | 320 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025195 | anatomy | pollen tube cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MVDCGVDIYQ LPVVPRACRS PRGRRLKIMR KQRSEFEVLA QVAGRFSGER KNRIVIGSLA 60 HETKETKDDN VVVNNFLETM EVEVKPQPGL ENLSQVLLSK DWLALGPSMP NSPITQEENF 120 DSRSKIVKFG IKSLNISELL VDVPESATVG SLKLAVLEAV TQILKGGLNI GVLFQGKTIV 180 DDSKTLLQIG IPYDDDDDEN LGSLGFMLEP QKSETTTITT LTTVSPRTRL RQNQVLGSVD 240 STEAVAAKSV VPVRMKPAWQ PEMVQRRIRR PFTVSEVEAL VQAVERLGTG RWRDVKSHAF 300 NHVNHRTYVD LKDKWKTLVH TAKISARQRR GEPVPQDLLD RVLAAHAFWS DRTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 9e-48 | 262 | 354 | 10 | 102 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334185959 | 0.0 | ||||
Genevisible | 251909_at | 0.0 | ||||
Expression Atlas | AT3G53790 | - | ||||
AtGenExpress | AT3G53790 | - | ||||
ATTED-II | AT3G53790 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Arabidopsis thaliana telomere-binding protein, putative (At3g53790) | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G53790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT3G53790 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy. {ECO:0000269|PubMed:15364931}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G53790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002686 | 1e-175 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319741.1 | 0.0 | TRF-like 4 | ||||
Swissprot | Q9M347 | 0.0 | TRP6_ARATH; Telomere repeat-binding protein 6 | ||||
TrEMBL | A0A178VMQ2 | 0.0 | A0A178VMQ2_ARATH; TRFL4 | ||||
STRING | AT3G53790.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15921 | 9 | 11 | Representative plant | OGRP1391 | 12 | 25 |
Link Out ? help Back to Top | |
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Phytozome | AT3G53790.1 |
Entrez Gene | 824546 |
iHOP | AT3G53790 |
wikigenes | AT3G53790 |
Publications ? help Back to Top | |||
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