 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT3G53200.1 |
| Common Name | AtMYB27, MYB27, T4D2.130 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
MYB |
| Protein Properties |
Length: 238aa MW: 27996.2 Da PI: 7.0501 |
| Description |
myb domain protein 27 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.1 | 3e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W +eEde+lv+++ +lG ++W++ a g++R++k+c++rw +yl
AT3G53200.1 11 RGPWLEEEDERLVKVISLLGERRWDSLAIVSGLKRSGKSCRLRWMNYL 58
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++++eE+ ++ ++++++G++ W++Iar+++ gRt++++k++w+++
AT3G53200.1 64 RGPMSQEEERIIFQLHALWGNK-WSKIARRLP-GRTDNEIKNYWRTH 108
89********************.*********.************87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0010200 | Biological Process | response to chitin |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP 60
TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE IKNYWRTHYR KKQEAQNYGK 120
LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS 180
PYENRISDWI SEISTDQSEA NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 7e-29 | 9 | 112 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-28 | 9 | 112 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-28 | 9 | 112 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 7e-29 | 9 | 112 | 2 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 7e-29 | 9 | 112 | 2 | 104 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Member of the R2R3 factor gene family. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK117256 | 0.0 | AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10. |
| GenBank | AY519599 | 0.0 | AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds. |
| GenBank | BT005257 | 0.0 | BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana.
Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
[PMID:11597504] - Van Hoewyk D, et al.
Overexpression of AtCpNifS enhances selenium tolerance and accumulation in Arabidopsis.
Plant Physiol., 2005. 139(3): p. 1518-28
[PMID:16244144] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
[PMID:17722694] - Velten J,Cakir C,Youn E,Chen J,Cazzonelli CI
Transgene silencing and transgene-derived siRNA production in tobacco plants homozygous for an introduced AtMYB90 construct.
PLoS ONE, 2012. 7(2): p. e30141
[PMID:22363419] - Albert NW, et al.
A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
Plant Cell, 2014. 26(3): p. 962-80
[PMID:24642943]
|
