PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G51120.1
Common NameF24M12.160
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 1292aa    MW: 142092 Da    PI: 6.7989
Description DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G51120.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-0712711292426
                   ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                   ++C+ f+++G+Ck+G++C+F H+
  AT3G51120.1 1271 KICK-FYESGYCKRGASCSFWHP 1292
                   6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.1E-8105165IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.2E-7106167IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.591110176IPR019787Zinc finger, PHD-finger
CDDcd155681.86E-19112157No hitNo description
SMARTSM002499.1E-7112158IPR001965Zinc finger, PHD-type
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475922.62E-21317394IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-23318398IPR003121SWIB/MDM2 domain
SMARTSM001515.5E-4320400IPR019835SWIB domain
PfamPF022014.6E-14324394IPR003121SWIB/MDM2 domain
SMARTSM007193.6E-50453563IPR004343Plus-3 domain
PROSITE profilePS5136018.844453586IPR004343Plus-3 domain
SuperFamilySSF1590421.31E-25454582IPR004343Plus-3 domain
PfamPF031263.9E-17458561IPR004343Plus-3 domain
SuperFamilySSF552771.57E-16713769IPR003169GYF domain
PROSITE profilePS5082915.717716770IPR003169GYF domain
CDDcd000722.38E-20716773No hitNo description
SMARTSM004443.6E-16717772IPR003169GYF domain
PfamPF022134.3E-12718762IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.7E-17718770IPR003169GYF domain
SuperFamilySSF902294.97E-612671291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.34212671292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-412711291IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-512711292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 1292 aa     Download sequence    Send to blast
MENQQKQLQQ GVPELASLAG REESSVRGID LMRVDQCEEI GVNQVPALSV PASTVAGAVA  60
VPMSNEQEVK VIDEAAPIKR KRGRPPRAQA NTPLHIRPPP PPPKKEDKEE DVCFICFDGG  120
DLVLCDRRNC PKAYHPACIK RDEAFFRTTA KWNCGWHICG TCQKASSYMC YTCTFSVCKR  180
CIKDADYVIV RGNMGLCGTC IKPIMLIENI AQGDNEAVKV DFDDKLSWEY LFKVYWLCLK  240
EELSLTVDEL TRANNPWKEV PNTAPKVESQ NDHTNNRALD VAVNGTKRRR TSDSPTLPNK  300
LDGKNPSNIL KKAPGDTSWA TKELLEFVSF MKNGDTSVLS QFDVQGLLLD YIKKKNLRDP  360
LQKSQVLCDQ MLVKLFGKQR VGHFEMLKLL ESHVLIQEKP KGAKTTNGET THAVPSQIEE  420
DSVHDPMVRD RRRKMRRKTD GRVQNENLDA YAAIDVHNIN LIYLRRKFLE SLLDDINKVD  480
EKVVGTILRI KVSGSDQKLD IHRLVQVVGT SKAIASYQLG AKTTDVMLEI LNLDKREVIS  540
IDQLSDQNIT EDECKRLRQS IKCGLNKRLT VVDILKTAAT LQAMRINEAL EAEILKLNHL  600
RDRAKKLELL KSPEERQRLL QEVPEVHTDP SMDPSHALSE DAGLGTRKQD NHVKAQSKGP  660
QNKGVNLNNV GNNVQKKYDA PILRSRNNVH ADKDDCSKVH NNSSNIQETG KDDEESEIWH  720
YRDPTGKTQG PFSMVQLRRW KSSGHFPPYL RIWRAHENQD ESVLLTDALA GRFDKATTLP  780
SSSSLPQELK PSPHDSGRTG ADVNCLQKNQ MPVNTSATSS SSSTVTAHSN DPKEKQVVAL  840
VACSGKVEDG NSVRPQPQVS CPASISVVPG HVVTPDVRET PGTDQYNTVR ADGNHNTTKT  900
LEDETNGGSV SINGSVHAPN LNQESHFLDF PSPTPKSSPE DLEAQAAETI QSLSSCVLVK  960
GPSGVTWSTT TTSTTDAATT TSSVVVTGGQ LPQVIQQNTV VLAAPSVKPI ELAADHATAT  1020
QTSDNTQVAQ ASGWPAIVAD PDECDESVSD LLAEVEAMEQ NGLPSSPTST FHCDDDDDLK  1080
GPEKDFFNPV ARMSLTPETC RLDVSQTSIL DNVSAGKSSM LTEAKDNTPF SHCGTAGPEL  1140
LLFAPPPPPP TAISHDLTLT TTALRLGSET TVEAGTVERL PKSVLGVSSE PSPRSLSSHD  1200
SSSARGSTER SPRVSQPKRS SGHSRDRQWL NNGHNSSFNN SHNNRQWPYS NSHGYDHGSG  1260
SYAAHPPKGL KICKFYESGY CKRGASCSFW HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-15104179781Histone-lysine N-methyltransferase NSD3
4gnd_C1e-15104179781Histone-lysine N-methyltransferase NSD3
4gne_A1e-15104179781Histone-lysine N-methyltransferase NSD3
4gnf_A1e-15104179781Histone-lysine N-methyltransferase NSD3
4gng_A1e-15104179781Histone-lysine N-methyltransferase NSD3
4gng_D1e-15104179781Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.8580.0root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402555900.0
Genevisible252142_at0.0
Expression AtlasAT3G51120-
AtGenExpressAT3G51120-
ATTED-IIAT3G51120-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G51120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G51120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319721.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A178VCX80.0A0A178VCX8_ARATH; Uncharacterized protein
STRINGAT3G51120.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Representative plantOGRP1807911
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]