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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT3G50700.1 |
| Common Name | AtIDD2, IDD2, T3A5.80 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C2H2 |
| Protein Properties |
Length: 452aa MW: 47943.2 Da PI: 9.9539 |
| Description |
indeterminate(ID)-domain 2 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.4 | 1.2e-05 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
AT3G50700.1 63 FVCEICNKGFQRDQNLQLHRRGH 85
89*******************88 PP
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| 2 | zf-C2H2 | 11.4 | 0.00099 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H + +
AT3G50700.1 139 WKCDKCSKKYAVQSDWKAHSKIC 161
58*****************9876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT 60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK KKVYVCPEVS CVHHDPSRAL 120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF 180
ITHRAFCDAL AEENARSHHS QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK 240
QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI 300
EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST 360
SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT TLDFLGLGRA VGNGNGPSNG 420
LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | zinc finger protein, similar to maize Indeterminate1 (ID1) |
| UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
| Function -- GeneRIF ? help
Back to Top |
- GAF1 interacts with the corepressor TPR and that DELLAs and TPR act as coactivators and a corepressor of GAF1, respectively. Gibberellin (GA) converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLAs.
[PMID: 25035403]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226933 | 0.0 | AK226933.1 Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08. |
| GenBank | BT014947 | 0.0 | BT014947.1 Arabidopsis thaliana At3g50700 gene, complete cds. |
| GenBank | BT015836 | 0.0 | BT015836.1 Arabidopsis thaliana At3g50700 gene, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
J. Biol. Chem., 2004. 279(2): p. 1060-9
[PMID:14576160] - Englbrecht CC,Schoof H,B
Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
BMC Genomics, 2004. 5(1): p. 39
[PMID:15236668] - Colasanti J, et al.
The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
BMC Genomics, 2006. 7: p. 158
[PMID:16784536] - Morita MT, et al.
A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.
Plant J., 2006. 47(4): p. 619-28
[PMID:16813575] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Fukazawa J, et al.
DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
Plant Cell, 2014. 26(7): p. 2920-38
[PMID:25035403] - Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Khare D, et al.
Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
New Phytol., 2017. 213(3): p. 1257-1273
[PMID:27768815]
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