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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT3G47870.1 |
| Common Name | ASL29, LBD27, SCP, T23J7.200 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
LBD |
| Protein Properties |
Length: 328aa MW: 37333.5 Da PI: 5.7248 |
| Description |
LOB domain-containing protein 27 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 121 | 6.7e-38 | 36 | 136 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e+++++am+s+++++ +r r Pv+G++gv ++lq + +++el++++
AT3G47870.1 36 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVN 133
7**********************************************************************************************999 PP
DUF260 99 eel 101
++l
AT3G47870.1 134 SQL 136
875 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MSNTKHIHKG LQERLLDLLL IALIVYMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE 60
QPKLFQNVHR LFGVRSIVKI LEKLDETQKP EAMKSIIFQS YVRDRSPVHG CLGVTQQLQY 120
MIWFAEEELK AVNSQLQLYR SQPQNGQNQN QNHNHNQMIH ELGSDHNKQQ EDVTSQQLDL 180
GMGLNVNNNQ SNVVTPFFSS LLPVSETQQP QMSYTYSCSE VNNNGYSPPA YNTDSGKEIL 240
TNNNNVWGDQ NRFLYNNNNG GGYSNQNESC HEMKSNGVMA IQSQLVNLQM VSNHQRVEEE 300
EADHEYDELH QFLDIIDDRQ SFGDSKEA
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| Functional Description ? help
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| Source |
Description |
| TAIR | Required for normal cell division during pollen development. Mutant has extra cell in pollen of vegetative cell identity. Male gametophytic mutation. |
| Function -- GeneRIF ? help
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- The SIDECAR POLLEN gene, a member of the LBD/ASL family, delays the timing of microspore division and alters division orientation. [SCP]
[PMID: 21105930] - SCP is a microspore-specific member of the LOB/AS2 domain family (LBD27/ASL29) showing that a plant-specific regulator plays a key role in oriented division of polarized microspores.
[PMID: 21364317] - A combinatorial role of LBD10 with LBD27 is crucial for male gametophyte development in Arabidopsis. LBD10 and LBD27 interact to form a heterodimer for nuclear localization.
[PMID: 25611322]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473862 | 0.0 | AB473862.1 Arabidopsis thaliana ASL29 mRNA for ASYMMETRIC LEAVES2-like 29 protein, complete cds. |
| GenBank | AL049746 | 0.0 | AL049746.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| Publications
? help Back to Top |
- Iwakawa H, et al.
The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
Plant Cell Physiol., 2002. 43(5): p. 467-78
[PMID:12040093] - Shuai B,Reynaga-Peña CG,Springer PS
The lateral organ boundaries gene defines a novel, plant-specific gene family.
Plant Physiol., 2002. 129(2): p. 747-61
[PMID:12068116] - Matsumura Y,Iwakawa H,Machida Y,Machida C
Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
Plant J., 2009. 58(3): p. 525-37
[PMID:19154202] - Oh SA,Park KS,Twell D,Park SK
The SIDECAR POLLEN gene encodes a microspore-specific LOB/AS2 domain protein required for the correct timing and orientation of asymmetric cell division.
Plant J., 2010. 64(5): p. 839-50
[PMID:21105930] - Oh SA,Twell D,Park SK
SIDECAR POLLEN suggests a plant-specific regulatory network underlying asymmetric microspore division in Arabidopsis.
Plant Signal Behav, 2011. 6(3): p. 416-9
[PMID:21364317] - Kim MJ,Kim M,Lee MR,Park SK,Kim J
LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis.
Plant J., 2015. 81(5): p. 794-809
[PMID:25611322] - Kim MJ,Kim M,Kim J
Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
Plant Signal Behav, 2015. 10(8): p. e1044193
[PMID:26252070] - Kim M,Kim MJ,Pandey S,Kim J
Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
Plant Cell Physiol., 2016. 57(11): p. 2291-2299
[PMID:27519310] - Chen YC,McCormick S
sidecar pollen, an Arabidopsis thaliana male gametophytic mutant with aberrant cell divisions during pollen development.
Development, 1996. 122(10): p. 3243-53
[PMID:8898236]
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