 |
Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT3G46130.1 |
| Common Name | ATMYB48, ATMYB48-1, ATMYB48-2, ATMYB48-3, F12M12.100, MYB48 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
MYB |
| Protein Properties |
Length: 256aa MW: 29654.1 Da PI: 9.1596 |
| Description |
myb domain protein 48 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.6 | 6e-18 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl
AT3G46130.1 9 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56
79********************************************97 PP
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| 2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
AT3G46130.1 62 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 107
89********************.*********.************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MMQEEGNRKG PWTEQEDILL VNFVHLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL 60
KRGKMTPQEE RLVLELHAKW GNRWSKIARK LPGRTDNEIK NYWRTHMRKK AQEKKRPVSP 120
TSSFSNCSSS SVTTTTTNTQ DTSCHSRKSS GEVSFYDTGG SRSTREMNQE NEDVYSLDDI 180
WREIDHSAVN IIKPVKDIYS EQSHCLSYPN LASPSWESSL DSIWNMDADK SKISSYFAND 240
QFPFCFQHSR SPWSSG
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons. |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Regulation -- Hormone ? help
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| Source |
Hormone |
| AHD | abscisic acid, ethylene, gibberellin, jasmonic acid, salicylic acid |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF272733 | 0.0 | AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds. |
| GenBank | AY519594 | 0.0 | AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana.
Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
[PMID:11597504] - Rashotte AM,Carson SD,To JP,Kieber JJ
Expression profiling of cytokinin action in Arabidopsis.
Plant Physiol., 2003. 132(4): p. 1998-2011
[PMID:12913156] - Folta KM,Pontin MA,Karlin-Neumann G,Bottini R,Spalding EP
Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light.
Plant J., 2003. 36(2): p. 203-14
[PMID:14535885] - Stanley Kim H, et al.
Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome.
Plant J., 2005. 41(2): p. 212-20
[PMID:15634198] - Zhao C,Craig JC,Petzold HE,Dickerman AW,Beers EP
The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl.
Plant Physiol., 2005. 138(2): p. 803-18
[PMID:15923329] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Li J, et al.
A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice.
J. Exp. Bot., 2006. 57(6): p. 1263-73
[PMID:16531467] - Bi YM,Wang RL,Zhu T,Rothstein SJ
Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis.
BMC Genomics, 2007. 8: p. 281
[PMID:17705847] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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