PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 164aa MW: 17739.5 Da PI: 9.8279

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G46080.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H AT3G46080.1 85 HPCPICGVEFPMGQALGGHMRRH 107 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.23E-7	35	107	No hit	No description
Pfam	PF13912	8.2E-12	36	61	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.995	37	59	IPR007087	Zinc finger, C2H2
SMART	SM00355	1	37	59	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.658	85	112	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.5E-12	85	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.079	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK 60 KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL GGHMRRHRSE KASPGTLVTR 120 SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.49395	0.0	leaf\| seed

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT3G46080
AtGenExpress	AT3G46080

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G46080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18201973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G46080

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL355775	0.0	AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_190194.1	1e-116	C2H2-type zinc finger family protein
Swissprot	Q9LX85	1e-117	ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBL	A0A178V7P0	1e-113	A0A178V7P0_ARATH; Uncharacterized protein
STRING	AT3G46080.1	1e-116	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2028	18	76
Representative plant	OGRP131	15	149

Link Out ? help Back to Top
Phytozome	AT3G46080.1
Entrez Gene	823751
iHOP	AT3G46080
wikigenes	AT3G46080

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Rizhsky L,Davletova S,Liang H,Mittler R The zinc finger protein Zat12 is required for cytosolic ascorbate peroxidase 1 expression during oxidative stress in Arabidopsis. J. Biol. Chem., 2004. 279(12): p. 11736-43 [PMID:14722088] Englbrecht CC,Schoof H,B Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics, 2004. 5(1): p. 39 [PMID:15236668] Taki N, et al. 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiol., 2005. 139(3): p. 1268-83 [PMID:16258017] Lee J, et al. Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell, 2007. 19(3): p. 731-49 [PMID:17337630] Zhao J, et al. Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta, 2007. 227(1): p. 13-24 [PMID:17665211] Libault M,Wan J,Czechowski T,Udvardi M,Stacey G Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11 [PMID:17722694] Suzuki N,Bajad S,Shuman J,Shulaev V,Mittler R The transcriptional co-activator MBF1c is a key regulator of thermotolerance in Arabidopsis thaliana. J. Biol. Chem., 2008. 283(14): p. 9269-75 [PMID:18201973] Papdi C, et al. Functional identification of Arabidopsis stress regulatory genes using the controlled cDNA overexpression system. Plant Physiol., 2008. 147(2): p. 528-42 [PMID:18441225] Abercrombie JM, et al. Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. BMC Plant Biol., 2008. 8: p. 87 [PMID:18684332] Klopffleisch K, et al. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Mol. Syst. Biol., 2011. 7: p. 532 [PMID:21952135]