PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 170aa MW: 18754.3 Da PI: 8.8553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G46070.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H AT3G46070.1 86 HTCPICGLEFPMGQALGGHMRKH 108 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.16E-7	34	108	No hit	No description
Pfam	PF13912	1.2E-9	35	60	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.12	36	63	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.1	36	58	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	38	58	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.8E-11	85	109	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.824	86	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0009046	anatomy	flower
PO:0007611	developmental stage	petal differentiation and expansion stage

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK 60 LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA LGGHMRKHRN EKEREKASNV 120 LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	78	PKKKPKT

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	252567_at	0.0
Expression Atlas	AT3G46070	-
AtGenExpress	AT3G46070	-
ATTED-II	AT3G46070	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00393	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G46070.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18201973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G46070

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL355775	0.0	AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	DQ446739	0.0	DQ446739.1 Arabidopsis thaliana clone pENTR221-At3g46070 zinc finger family protein (At3g46070) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_190193.1	1e-123	C2H2-type zinc finger family protein
Swissprot	Q9LX85	6e-71	ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBL	A0MF10	1e-122	A0MF10_ARATH; Uncharacterized protein (Fragment)
TrEMBL	Q9LX86	1e-122	Q9LX86_ARATH; C2H2-type zinc finger family protein
STRING	AT3G46070.1	1e-123	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2028	18	76
Representative plant	OGRP131	15	149

Link Out ? help Back to Top
Phytozome	AT3G46070.1
Entrez Gene	823750
iHOP	AT3G46070
wikigenes	AT3G46070

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Yang T,Poovaiah BW A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J. Biol. Chem., 2002. 277(47): p. 45049-58 [PMID:12218065] Englbrecht CC,Schoof H,B Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics, 2004. 5(1): p. 39 [PMID:15236668] Stanley Kim H, et al. Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome. Plant J., 2005. 41(2): p. 212-20 [PMID:15634198] Mittler R, et al. Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS Lett., 2006. 580(28-29): p. 6537-42 [PMID:17112521] Rossel JB, et al. Systemic and intracellular responses to photooxidative stress in Arabidopsis. Plant Cell, 2007. 19(12): p. 4091-110 [PMID:18156220]