PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G30260.1 | ||||||||
Common Name | AGL79 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28075.2 Da PI: 10.1628 | ||||||||
Description | AGAMOUS-like 79 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3.1e-29 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rienk++rqvtfskRr+g+ KKA+E+SvLCdaeva+i+fs++gkl+eys AT3G30260.1 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPKGKLFEYS 58 8***********************************************8 PP | |||||||
2 | K-box | 80.3 | 4.7e-27 | 89 | 172 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++e +kL + i+ Lqr++Rhl Ge+++ Ls+++Lq +e qL+++lkk Rs+Kn+l++e+i +lqkkekel+e +k+L+kk AT3G30260.1 89 GECSTECSKLLRMIDVLQRSLRHLRGEEVDGLSIRDLQGVEMQLDTALKKTRSRKNQLMVESIAQLQKKEKELKELKKQLTKKA 172 57899****************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.908 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.40E-38 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 1.2E-30 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-22 | 87 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.245 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG 60 SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR MIDVLQRSLR HLRGEEVDGL 120 SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT 180 QNLSHDLASL ATPPFESPHE LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP 240 HWMPQLTGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-20 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 9e-20 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 9e-20 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 9e-20 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 256703_at | 1e-146 | ||||
Expression Atlas | AT3G30260 | - | ||||
AtGenExpress | AT3G30260 | - | ||||
ATTED-II | AT3G30260 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G30260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G30260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141238 | 0.0 | AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_189645.2 | 0.0 | AGAMOUS-like 79 | ||||
Swissprot | Q6E6S7 | 2e-75 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | Q7X9H6 | 0.0 | Q7X9H6_ARATH; AGAMOUS-like 79 | ||||
STRING | AT3G30260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13033 | 15 | 25 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT3G30260.1 |
Entrez Gene | 822726 |
iHOP | AT3G30260 |
wikigenes | AT3G30260 |