PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G29340.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 650aa    MW: 72765.2 Da    PI: 9.1877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G29340.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012445467123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC++C ksF  +  L +H+r+H
  AT3G29340.1 445 YKCSICEKSFVCSQALGSHQRLH 467
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.6E-84367IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6764370IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-54365IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-84365No hitNo description
SMARTSM003550.0514365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-893120No hitNo description
PROSITE profilePS5015711.11598125IPR007087Zinc finger, C2H2
PfamPF139123.9E-498122IPR007087Zinc finger, C2H2
SMARTSM003550.9398120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8198220No hitNo description
PROSITE patternPS000280198220IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159198220IPR007087Zinc finger, C2H2
SMARTSM003554.1198220IPR015880Zinc finger, C2H2-like
PfamPF139120.0013199222IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8319346No hitNo description
PROSITE profilePS5015710.97324351IPR007087Zinc finger, C2H2
SMARTSM003552.4324346IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280326346IPR007087Zinc finger, C2H2
PfamPF139124.3E-4445468IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-6445467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-7445467No hitNo description
PROSITE profilePS5015711.281445467IPR007087Zinc finger, C2H2
SMARTSM003550.049445467IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280447467IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-7585612No hitNo description
SMARTSM00355210590612IPR015880Zinc finger, C2H2-like
PfamPF139120.022594614IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MDLDGVELLL DLREMVSQSG FEKSTTCSGV IALRSNLQSK SSHKCKICGK SFECYQALGG  60
HQRIHRPIKE KLSKQEFSEV YPRKSKLQKR PESSSSCYEC KVCGKIFGCY RGLGGHTKLH  120
RSTKRELAST QDENSLLDSS EAKKIVSQPS SFKVSQEEKF LHCVELKQDF SEPLSHSGAL  180
PSTLRSKLQT KTQWKSSCHC KICGKSFVCS QGLGNHKRVH REISGKLACK RKYTEDYNPF  240
SDSLKAKKIV KKPSSFEVSQ EEKILHCVEL KQDFGELLAH SGFDKSISCS KSIKVKKVAR  300
KNEKTEDSTS LFGVFVGEMS QRLHGCKTCG RKFGTLKGVY GHQRMHSGNH NRIEDENGLE  360
RIWGLKKKSR VCSVSAFDRF KGSSFMAEIE KHEVIEAALN LVMLCQGVYD FASISNLPLG  420
DGFMDLELKP CPLRRKLQKK SRSSYKCSIC EKSFVCSQAL GSHQRLHRWK LVPKPEYIED  480
DSSLLDSSEA KKIVSKPSSF EHAQEEKILQ CVEPKLEFHE QLAHSGFDKF DTCSKIRFSA  540
LPSPPEAKKI VSQPPSFEVS VDEKILYRAE PKLNFSEPLA HSCFDNSSSY RSIICGKSFV  600
CSQALGGHQT LHRSIKGQLA GTEDGNSLSV TDSEASKIVA QPSSYKSQGI
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184061530.0
Expression AtlasAT3G29340-
AtGenExpressAT3G29340-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G29340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G29340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013090.0AP001309.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MUO10.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_189580.10.0zinc finger (C2H2 type) family protein
TrEMBLF4J3110.0F4J311_ARATH; Zinc finger (C2H2 type) family protein
STRINGAT3G29340.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]