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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT3G25710.1 |
| Common Name | ATAIG1, BHLH32, EN54, K13N2.1, TMO5 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 344aa MW: 39496.8 Da PI: 5.9901 |
| Description |
basic helix-loop-helix 32 |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 43.9 | 4.2e-14 | 134 | 180 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L
AT3G25710.1 134 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 180
79*************************9.....8****************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0080147 | Biological Process | root hair cell development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MYAMKEEDCL QTFHNLQDYQ DQFHLHHHPQ ILPWSSTSLP SFDPLHFPSN PTRYSDPVHY 60
FNRRASSSSS SFDYNDGFVS PPPSMDHPQN HLRILSEALG PIMRRGSSFG FDGEIMGKLS 120
AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL 180
KRQTSQITDT YQVPTECDDL TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL 240
RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE 300
ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, specific for vascular tissues. {ECO:0000269|PubMed:20220754}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a basic helixloophelix transcription factor that is expressed in the hypophysis-adjacent embryo cells, and is required and partially sufficient for MP-dependent root initiation. Involved in response to phosphate starvation. Negative regulator of root hair development, anthocyanin formation and Pi content. |
| UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
| Function -- GeneRIF ? help
Back to Top |
- TARGET OF MP, TMO5 and TMO7 encode basic helix-loop-helix (bHLH) transcription factors that are expressed in the hypophysis-adjacent embryo cells, and are required and partially sufficient for MONOPTEROS-dependent root initiation. [TMO5]
[PMID: 20220754]
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| Phenotype -- Disruption Phenotype ? help
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| Source |
Description |
| UniProt | DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy with BHLH30. {ECO:0000269|PubMed:20220754}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY058840 | 0.0 | AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. |
| GenBank | AY079033 | 0.0 | AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. |
| GenBank | AY086383 | 0.0 | AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence. |
| GenBank | DQ205679 | 0.0 | DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Plant Cell, 2003. 15(11): p. 2497-502
[PMID:14600211] - Kim J,Kim HY
Molecular characterization of a bHLH transcription factor involved in Arabidopsis abscisic acid-mediated response.
Biochim. Biophys. Acta, 2006 Mar-Apr. 1759(3-4): p. 191-4
[PMID:16730809] - Mace DL, et al.
Quantification of transcription factor expression from Arabidopsis images.
Bioinformatics, 2006. 22(14): p. e323-31
[PMID:16873489] - Chen ZH,Nimmo GA,Jenkins GI,Nimmo HG
BHLH32 modulates several biochemical and morphological processes that respond to Pi starvation in Arabidopsis.
Biochem. J., 2007. 405(1): p. 191-8
[PMID:17376028] - Ohashi-Ito K,Bergmann DC
Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.
Development, 2007. 134(16): p. 2959-68
[PMID:17626058] - Vald
Transcriptional regulation and signaling in phosphorus starvation: what about legumes?
J Integr Plant Biol, 2008. 50(10): p. 1213-22
[PMID:19017108] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Schlereth A, et al.
MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor.
Nature, 2010. 464(7290): p. 913-6
[PMID:20220754] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map.
Science, 2011. 333(6042): p. 601-7
[PMID:21798944] - Saiga S, et al.
Control of embryonic meristem initiation in Arabidopsis by PHD-finger protein complexes.
Development, 2012. 139(8): p. 1391-8
[PMID:22378640] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ohashi-Ito K, et al.
A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
Curr. Biol., 2014. 24(17): p. 2053-8
[PMID:25131670] - Jost R, et al.
Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
J. Exp. Bot., 2015. 66(9): p. 2501-14
[PMID:25697796] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178] - Vera-Sirera F, et al.
A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
Dev. Cell, 2015. 35(4): p. 432-43
[PMID:26609958] - Katayama H, et al.
A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
Curr. Biol., 2015. 25(23): p. 3144-50
[PMID:26616019] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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