PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G20880.1 | ||||||||
Common Name | MOE17.19, WIP4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 412aa MW: 47154.8 Da PI: 6.993 | ||||||||
Description | WIP domain protein 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.9e-05 | 256 | 275 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ AT3G20880.1 256 FSCPLCFKTFNRYNNMQMHM 275 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 340 | 362 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ AT3G20880.1 340 FACRRCGKAFAVKGDWRTHEKNC 362 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 256 | 275 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 256 | 283 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.29E-6 | 326 | 360 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 327 | 360 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 340 | 360 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0003021 | anatomy | central root cap of primary root | ||||
PO:0020149 | anatomy | quiescent center | ||||
PO:0007131 | developmental stage | seedling development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS 60 LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF YYPHQTTNPN INENPNLTSP 120 DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL 180 HLGLPNLGDG GSSSSDVVLD STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH 240 FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL 300 PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK 360 NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE EEEAASDVEQ QE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42565065 | 0.0 | ||||
Genevisible | 257544_at | 0.0 | ||||
Expression Atlas | AT3G20880 | - | ||||
AtGenExpress | AT3G20880 | - | ||||
ATTED-II | AT3G20880 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G20880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G20880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 0.0 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188724.2 | 0.0 | WIP domain protein 4 | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A178VN07 | 0.0 | A0A178VN07_ARATH; WIP4 | ||||
STRING | AT3G20880.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 | Representative plant | OGRP410 | 15 | 97 |
Link Out ? help Back to Top | |
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Phytozome | AT3G20880.1 |
Entrez Gene | 821637 |
iHOP | AT3G20880 |
wikigenes | AT3G20880 |