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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT3G18960.1 |
| Common Name | K13E13.7 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
B3 |
| Protein Properties |
Length: 209aa MW: 24091.5 Da PI: 7.8347 |
| Description |
B3 family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 51.4 | 1.9e-16 | 30 | 119 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
ffk +ps + k +++ +p +f++ g+k s +tle++ g + ++kl ++ ++++++ +GW+eF++a+ ++eg f++F+++++s+f +v +f
AT3G18960.1 30 FFKLVLPSTM-KDKMMKIPPRFVKLQGSK--LSEVVTLETPAGFKRSIKL--KRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSF--RVIIF 119
6676656555.5556********555554..7789***************..********************************999999..77666 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE 60
VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKE NSSFRVIIFN 120
VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE 180
LDKILHDLDV MNPMHVLKEE EEDKRVFRG
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229681 | 0.0 | AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20. |
| GenBank | BT006139 | 0.0 | BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds. |
| GenBank | BT008541 | 0.0 | BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duque P,Chua NH
IMB1, a bromodomain protein induced during seed imbibition, regulates ABA- and phyA-mediated responses of germination in Arabidopsis.
Plant J., 2003. 35(6): p. 787-99
[PMID:12969431] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Swaminathan K,Peterson K,Jack T
The plant B3 superfamily.
Trends Plant Sci., 2008. 13(12): p. 647-55
[PMID:18986826] - Cui H,Benfey PN
Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root.
Plant J., 2009. 58(6): p. 1016-27
[PMID:19228333] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map.
Science, 2011. 333(6042): p. 601-7
[PMID:21798944] - Mantegazza O, et al.
Analysis of the arabidopsis REM gene family predicts functions during flower development.
Ann. Bot., 2014. 114(7): p. 1507-15
[PMID:25002525]
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