PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G18100.1 | ||||||||
Common Name | AtMYB4R1, MYB4R1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 847aa MW: 96084.4 Da PI: 5.5798 | ||||||||
Description | myb domain protein 4r1 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1.1e-07 | 443 | 487 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+ Ed+ l++ ++q +W Ia +g++Rt+ qc r+q AT3G18100.1 443 GPWTAAEDKNLLRTIEQTSLTDWVDIAVSLGTNRTPFQCLARYQR 487 89*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 495 | 539 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ WT+eEd++l av+++G ++W ++a+ + gRt+ qc +rw k AT3G18100.1 495 KKEWTAEEDDQLRTAVELFGEKDWQSVANVLK-GRTGTQCSNRWKK 539 679****************************9.***********98 PP | |||||||
3 | Myb_DNA-binding | 51 | 3.4e-16 | 546 | 591 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W+ eEd++ + av+++G+ +W++I++ ++ gRt qc++rw++ AT3G18100.1 546 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTQTQCRERWLNC 591 799*****************************.***********996 PP | |||||||
4 | Myb_DNA-binding | 45.9 | 1.3e-14 | 598 | 641 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT+eEde+l +a++++G W+++a + Rt++qc rw AT3G18100.1 598 RGKWTEEEDEKLREAIAEHGYS-WSKVATNLS-CRTDNQCLRRWKR 641 89******************99.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.03 | 343 | 436 | IPR017877 | Myb-like domain |
SMART | SM00717 | 13 | 347 | 438 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-6 | 350 | 366 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-6 | 412 | 448 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.39E-13 | 420 | 486 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.711 | 437 | 489 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.5E-7 | 441 | 491 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-6 | 443 | 487 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 449 | 496 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.66E-21 | 474 | 544 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.219 | 490 | 545 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 494 | 543 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 495 | 539 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-12 | 497 | 541 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 497 | 544 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 545 | 594 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 546 | 591 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.381 | 546 | 592 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 547 | 598 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.33E-10 | 548 | 590 | No hit | No description |
SuperFamily | SSF46689 | 1.4E-25 | 572 | 647 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.785 | 593 | 647 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-12 | 597 | 645 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 598 | 642 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 599 | 642 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.59E-11 | 600 | 642 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0042795 | Biological Process | snRNA transcription from RNA polymerase II promoter | ||||
GO:0042796 | Biological Process | snRNA transcription from RNA polymerase III promoter | ||||
GO:0019185 | Cellular Component | snRNA-activating protein complex | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MNRNSLYEAD DDDDDDEEDD IGEDLEDLRR ACMVSDVNSD QFASKTGSIE PEGVGGGEIP 60 SDSENEDDFE MLRTIKSQLA SSKDAGRSSG PPMGLSLLSD SESEDDFEMI RSIKSQLSLS 120 MDVSLPPIGL SDDEEDDAFE TLRAIRRRFS AYKNFDSEGK FMNDSHGKKK QVHNSDNEPS 180 SEILSRSNTC ESFPDHGKSV VTVPDSEDVQ DGHMPAASSS FPEAARAFVD AIRRNRAYQK 240 FLRGKLAEIE ATIEQNEKHK KNVRIVKDFQ ASCKRITKLA LCQRKDPRVE LISTRKSGPC 300 DSSEVIGPCD SFEGNDKKIS PLTLGPAENP CVENYRMALE KYPISVKRRK WSTEENKNLA 360 KGLKQEVQKI LLSEAIERSS DLEGATYDID TINESIGNLE ITPEMIRQFL PKINWDSLDI 420 KDRSAAECEA RWMSSEDPLI NHGPWTAAED KNLLRTIEQT SLTDWVDIAV SLGTNRTPFQ 480 CLARYQRSLN PSILKKEWTA EEDDQLRTAV ELFGEKDWQS VANVLKGRTG TQCSNRWKKS 540 LRPTRKGTWS LEEDKRVKVA VTLFGSQNWH KISQFVPGRT QTQCRERWLN CLDPKVNRGK 600 WTEEEDEKLR EAIAEHGYSW SKVATNLSCR TDNQCLRRWK RLYPHQVALL QEARRLQKEA 660 SVGNFVDRES ERPALVTSPI LALPDISLEP EPDSVALKKK RKAKQKKSDA ERQPKRRRKG 720 LKNCSGDVCR QENETVCENE PNNGGEERML ALECHDEIQD NAKEKPKQRR KSVAETVCEN 780 EPNNGGEERM LALECDNEIQ DNAKEKRKRR RKSVAETSNN TTGLKKLTPR RRKISAVVPI 840 KNQDAPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-30 | 404 | 639 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-30 | 404 | 639 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 699 | 717 | KRKAKQKKSDAERQPKRRR |
2 | 699 | 718 | KRKAKQKKSDAERQPKRRRK |
3 | 805 | 810 | KRKRRR |
4 | 805 | 811 | KRKRRRK |
5 | 806 | 810 | RKRRR |
6 | 828 | 832 | PRRRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30684778 | 0.0 | ||||
Genevisible | 258157_at | 0.0 | ||||
Expression Atlas | AT3G18100 | - | ||||
AtGenExpress | AT3G18100 | - | ||||
ATTED-II | AT3G18100 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Member of the R2R3 transcription factor gene family. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G18100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G18100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY033827 | 0.0 | AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566597.1 | 0.0 | myb domain protein 4r1 | ||||
TrEMBL | A0A384LQA7 | 0.0 | A0A384LQA7_ARATH; MYB4R1 | ||||
TrEMBL | Q9LV31 | 0.0 | Q9LV31_ARATH; Myb domain protein 4r1 | ||||
STRING | AT3G18100.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6504 | 27 | 44 |
Representative plant | OGRP7355 | 16 | 17 |
Link Out ? help Back to Top | |
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Phytozome | AT3G18100.1 |
Entrez Gene | 821335 |
iHOP | AT3G18100 |
wikigenes | AT3G18100 |
Publications ? help Back to Top | |||
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