PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G13890.1 | ||||||||
Common Name | ATMYB26, MDC16.1, MS35, MYB26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 367aa MW: 41576.5 Da PI: 7.7821 | ||||||||
Description | myb domain protein 26 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 14 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++++ g + R++k+c++rw +yl AT3G13890.1 14 RGLWSPEEDEKLINYINSYGHGCWSSVPKHAGtythihgfcLQRCGKSCRLRWINYL 70 788****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 76 | 118 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ AT3G13890.1 76 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 118 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 6 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.313 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.19E-28 | 11 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 14 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-12 | 17 | 70 | No hit | No description |
PROSITE profile | PS51294 | 25.209 | 71 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 74 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 76 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.91E-11 | 78 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000056 | anatomy | flower bud | ||||
PO:0009056 | anatomy | flower nectary | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009067 | anatomy | filament | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0009074 | anatomy | style | ||||
PO:0020002 | anatomy | anther wall endothecium | ||||
PO:0001170 | developmental stage | seed development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGTYTHI HGFCLQRCGK 60 SCRLRWINYL RPDLKRGSFS PQEAALIIEL HSILGNRWAQ IAKHLPGRTD NEVKNFWNSS 120 IKKKLMSHHH HGHHHHHLSS MASLLTNLPY HNGFNPTTVD DESSRFMSNI ITNTNPNFIT 180 PSHLSLPSPH VMTPLMFPTS REGDFKFLTT NNPNQSHHHD NNHYNNLDIL SPTPTINNHH 240 QPSLSSCPHD NNLQWPALPD FPASTISGFQ ETLQDYDDAN KLNVFVTPFN DNAKKLLCGE 300 VLEGKVLSSS SPISQDHGLF LPTTYNFQMT STSDHQHHHR VDSYINHMII PSSSSSSPIS 360 CGQYVIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 14 | 125 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.5633 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5823326 | 0.0 | ||||
Genevisible | 258195_at | 0.0 | ||||
Expression Atlas | AT3G13890 | - | ||||
AtGenExpress | AT3G13890 | - | ||||
ATTED-II | AT3G13890 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in anthers early during endothecial development, with maximal expression during pollen mitosis I and bicellular stages. {ECO:0000269|PubMed:17329564}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:12753590}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants. | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G13890.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT2G38080(A), AT2G46770(A), AT3G61910(A), AT4G18780(A), AT5G17420(A), AT5G54690(A) |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | gibberellin |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Male sterility due to a defect in anther dehiscence. Fertile pollen. {ECO:0000269|PubMed:12753590}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G13890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175997 | 0.0 | AF175997.1 Arabidopsis thaliana putative transcription factor (MYB26) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566467.2 | 0.0 | myb domain protein 26 | ||||
Swissprot | Q9SPG3 | 0.0 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A178VHB1 | 0.0 | A0A178VHB1_ARATH; MYB26 | ||||
STRING | AT3G13890.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12803 | 19 | 30 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT3G13890.1 |
Entrez Gene | 820602 |
iHOP | AT3G13890 |
wikigenes | AT3G13890 |