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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT3G12720.1 |
Common Name | ATMYB67, ATY53, MYB67 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MYB |
Protein Properties |
Length: 307aa MW: 34744.3 Da PI: 7.056 |
Description |
myb domain protein 67 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l+++++ +G ++W+++++ g+ R++k+c++rw +yl
AT3G12720.1 24 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71
788*******************************************97 PP
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2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++ +eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
AT3G12720.1 77 RGSFNEEEEQIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
899*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0030154 | Biological Process | cell differentiation |
GO:0005634 | Cellular Component | nucleus |
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG 60 KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS 120 CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN 180 INPPTSTKPN KLKSPNQTTI PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD 240 VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD 300 DLGSWTF
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Functional Description ? help
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Source |
Description |
TAIR | Member of the R2R3 factor gene family. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY039554 | 0.0 | AY039554.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds. |
GenBank | AY102155 | 0.0 | AY102155.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana. Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56 [PMID:11597504] - Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J., 2004. 38(2): p. 366-79 [PMID:15078338] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol. Biol., 2006. 60(1): p. 107-24 [PMID:16463103] - Nozawa A, et al.
Construction of a protein library of Arabidopsis transcription factors using a wheat cell-free protein production system and its application for DNA binding analysis. Biosci. Biotechnol. Biochem., 2009. 73(7): p. 1661-4 [PMID:19584551] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944]
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