PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G12130.1 | ||||||||
Common Name | T21B14.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 248aa MW: 25952.1 Da PI: 9.9805 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.6e-07 | 38 | 61 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H AT3G12130.1 38 KSKPCTKFFSTSGCPFGENCHFLH 61 7789******************** PP | |||||||
2 | zf-CCCH | 35.2 | 2e-11 | 214 | 239 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C +f++ G C +GdrC+FaHg+ AT3G12130.1 214 FKTKICERFSK-GNCTFGDRCHFAHGE 239 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.84 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-8 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-5 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.36E-15 | 102 | 183 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 6.3E-15 | 112 | 181 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.1E-10 | 112 | 182 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.068 | 113 | 177 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.3E-11 | 115 | 178 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 6.58E-13 | 115 | 178 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-15 | 208 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.821 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-8 | 213 | 243 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-7 | 213 | 239 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-9 | 214 | 239 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL 60 HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG ESGPGHVSNF GDSATARFSV 120 DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL 180 IGRLNSAAKK PPGGGLGGGG GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA 240 ELRKSGIV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27694 | 0.0 | bud| flower| root| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145338404 | 0.0 | ||||
Genevisible | 256278_at | 0.0 | ||||
Expression Atlas | AT3G12130 | - | ||||
AtGenExpress | AT3G12130 | - | ||||
ATTED-II | AT3G12130 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G12130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G12130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227373 | 0.0 | AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23. | |||
GenBank | AY085746 | 0.0 | AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence. | |||
GenBank | BT025032 | 0.0 | BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566412.1 | 0.0 | KH domain-containing protein / zinc finger (CCCH type) family protein | ||||
Swissprot | Q9C7C3 | 0.0 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A178V6T0 | 1e-180 | A0A178V6T0_ARATH; Uncharacterized protein | ||||
STRING | AT3G12130.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 | Representative plant | OGRP1026 | 17 | 56 |
Link Out ? help Back to Top | |
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Phytozome | AT3G12130.1 |
Entrez Gene | 820388 |
iHOP | AT3G12130 |
wikigenes | AT3G12130 |