|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
AT3G10040.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
Family |
Trihelix |
Protein Properties |
Length: 431aa MW: 48870.3 Da PI: 8.063 |
Description |
sequence-specific DNA binding transcription factors |
Gene Model |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 71.1 | 2e-22 | 105 | 212 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76
+Wt+ +v++Li a+ +++++ + + +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++
AT3G10040.1 105 KWTDTMVRLLIMAVFYIGDEAGLNDpvdakkktgggggggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVV 202
7**************9888888554455567788899999999999**********************************************89**** PP
trihelix 77 stcpyfdqle 86
++ ++++++
AT3G10040.1 203 ENQGLLESMD 212
***9999998 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 9.5E-20 | 103 | 238 | No hit | No description |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010629 | Biological Process | negative regulation of gene expression |
GO:1900037 | Biological Process | regulation of cellular response to hypoxia |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MESNVMFSGF SPRMLSLEMP QNPPNPQNSI QFQHPHPYTT SGDQQTQPPI KSLYPYASKP 60 KQMSPISGGG CDDEDRGSGS GSGCNPEDSA GTDGKRKLSQ WHRMKWTDTM VRLLIMAVFY 120 IGDEAGLNDP VDAKKKTGGG GGGGGGGGML QKKGKWKSVS RAMVEKGFSV SPQQCEDKFN 180 DLNKRYKRVN DILGKGIACR VVENQGLLES MDHLTPKLKD EVKKLLNSKH LFFREMCAYH 240 NSCGHLGGHD QQPPQQNPIS IPIPSQQQNC FHAAEAGKMA RIAERVEVEE EVESDMAEDS 300 ESEMEESEEE ETRKKRRIST AVKRLREEAA SVVEDVGKSV WEKKEWIRRK MLEIEEKKIG 360 YEWEGVEMEK QRVKWMRYRS KKEREMEKAK LDNQRRRLET ERMILMLRRS EIELNELQSS 420 GTRVDPSSAK G
|
Function -- GeneRIF ? help
Back to Top |
- HRA1 interacts with the RAP2.12 protein but with only a few genomic DNA regions from hypoxia-regulated genes, indicating that HRA1 modulates RAP2.12 through protein-protein interaction. [HRA1]
[PMID: 25226037]
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | ATAC010927 | 0.0 | AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence. |
GenBank | AY091028 | 0.0 | AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Gonzali S, et al.
The use of microarrays to study the anaerobic response in Arabidopsis. Ann. Bot., 2005. 96(4): p. 661-8 [PMID:16033780] - Oono Y, et al.
Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays. Funct. Integr. Genomics, 2006. 6(3): p. 212-34 [PMID:16463051] - Luhua S, et al.
Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Physiol Plant, 2013. 148(3): p. 322-33 [PMID:23517122] - Giuntoli B, et al.
A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis. PLoS Biol., 2014. 12(9): p. e1001950 [PMID:25226037]
|