PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G10030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 542aa MW: 59247.8 Da PI: 6.558 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.2 | 6.6e-21 | 160 | 246 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++++ ++l+rg+l++ +Weev++ + r +++++s +qCk+k++nl+kryk ++++++++ ++ s++p+f+++e AT3G10030.1 160 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVseRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSG-GTAASHWPWFKKME 246 5*************************************888899****************************9.556669*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.3E-22 | 158 | 248 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 1.5E-67 | 293 | 534 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 1.31E-53 | 301 | 534 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 7.32E-120 | 303 | 535 | No hit | No description |
Pfam | PF00696 | 6.5E-25 | 304 | 514 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008652 | Biological Process | cellular amino acid biosynthetic process | ||||
GO:0016310 | Biological Process | phosphorylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016301 | Molecular Function | kinase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MASCDDDFSL LGDDQSNPNQ HHHHHQVLHH TPYAPRRFNP KPSNQILLPH HQRNGDEDDE 60 NDVVVEASSA FHGHGVNPFT ADENSNPYDD NNAAVDEDED EDLGANRSRI GGVRVEKRQS 120 QEELSDGGTT NGGEITPYGS FKRPRTSSSS AGEYRKDREE WSDAAIACLL DAYSDKFTQL 180 NRGNLRGRDW EEVASSVSER CEKLSKSVEQ CKNKIDNLKK RYKLERHRMS SGGTAASHWP 240 WFKKMEDIVG NSLALKGASD EDRSGSSMGN TVKPARRYPL VTYNPGVQIN NVKSKATSNP 300 RWRRVVLKIS GAALACTGPN NIDPKVINLI AREVAMACRL GVEVAIVVGS RNFFCGSTWV 360 TATGLDRTTA YHISMMASVM NSALLQSSLE KIGVQARLQT AISVQGVGEP YNRQRATRHL 420 DKGRVVIFGG IGATLGNPLL SSDASAALRA IDINAEAVVK GTNVDGVYDC HSQDSNVTFE 480 HISFQDLASR GLTSMDTMAL NFCEENSIPV VVFNFLEAGN ITKALCGEQV GTLIDRSGRG 540 VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek5_B | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek5_C | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek5_D | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek5_E | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek5_F | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek6_A | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek6_B | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek6_C | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek6_D | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek6_E | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
3ek6_F | 5e-57 | 294 | 534 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.28740 | 0.0 | flower| leaf| seed| silique| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258885_at | 0.0 | ||||
Expression Atlas | AT3G10030 | - | ||||
AtGenExpress | AT3G10030 | - | ||||
ATTED-II | AT3G10030 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G10030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G10030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF375431 | 0.0 | AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds. | |||
GenBank | AY120687 | 0.0 | AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566366.1 | 0.0 | aspartate/glutamate/uridylate kinase family protein | ||||
TrEMBL | A0A384L583 | 0.0 | A0A384L583_ARATH; Uncharacterized protein | ||||
TrEMBL | Q94JR1 | 0.0 | Q94JR1_ARATH; AT3g10030/T22K18_15 | ||||
STRING | AT3G10030.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9305 | 26 | 31 |
Representative plant | OGRP6161 | 12 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT3G10030.1 |
Entrez Gene | 820164 |
iHOP | AT3G10030 |
wikigenes | AT3G10030 |
Publications ? help Back to Top | |||
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