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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT3G09230.1 |
| Common Name | AtMYB1, F3L24.10, MYB1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MYB |
| Protein Properties |
Length: 393aa MW: 42811.4 Da PI: 5.2165 |
| Description |
myb domain protein 1 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.4 | 6.8e-18 | 55 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEd+ l ++vk+lG ++W+ Iar ++ gR++k+c++rw +
AT3G09230.1 55 KGPWSKEEDDVLSELVKRLGARNWSFIARSIP-GRSGKSCRLRWCNQ 100
79******************************.***********985 PP
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| 2 | Myb_DNA-binding | 51.7 | 2e-16 | 107 | 150 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r+++T+ Ed+ ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++
AT3G09230.1 107 RNSFTEVEDQAIIAAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNS 150
789*******************.*********.***********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK 60
EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ LNPNLIRNSF TEVEDQAIIA 120
AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT 180
TTVASSEETL SSGGGCHVTT PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT 240
LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG 300
CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME 360
DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
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| Functional Description ? help
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| Source |
Description |
| TAIR | member of MYB3R- and R2R3- type MYB- encoding genes |
| Function -- GeneRIF ? help
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- Transcription factors (TFs) AtMYB80, AtMYB1 (positive regulators) identified by in silico analysis were found to upregulate A9 promoter activity following the over-expression of the TFs in transient and stable (transgenic) expression assays in both Arabidopsis thaliana and tobacco.
[PMID: 28849604]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY550295 | 0.0 | AY550295.1 Arabidopsis thaliana MYB transcription factor (At3g09230) mRNA, complete cds. |
| GenBank | BT026429 | 0.0 | BT026429.1 Arabidopsis thaliana At3g09230 mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana.
Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
[PMID:11597504] - Ramirez-Parra E,Fr
A genome-wide identification of E2F-regulated genes in Arabidopsis.
Plant J., 2003. 33(4): p. 801-11
[PMID:12609051] - Shinozaki K,Yamaguchi-Shinozaki K,Urao T,Koizumi M
Nucleotide sequence of a gene from Arabidopsis thaliana encoding a myb homologue.
Plant Mol. Biol., 1992. 19(3): p. 493-9
[PMID:1623193] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Wang T, et al.
Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
Plant Physiol., 2015. 169(2): p. 1027-41
[PMID:26243618] - Nguyen HT, et al.
A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
Plant Cell Physiol., 2016. 57(4): p. 784-97
[PMID:26872838] - Sanz-Fernández M, et al.
Screening Arabidopsis mutants in genes useful for phytoremediation.
J. Hazard. Mater., 2017. 335: p. 143-151
[PMID:28441590] - Verma N,Burma PK
Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
Plant J., 2017. 92(3): p. 481-494
[PMID:28849604] - Kranz HD, et al.
Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana.
Plant J., 1998. 16(2): p. 263-76
[PMID:9839469]
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