PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G08505.1
Common NameMKRN, T8G24.6
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 323aa    MW: 36562.4 Da    PI: 7.3784
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G08505.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.5e-06426326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 + lC+ f+  G C  G++C F+H+
  AT3G08505.1  4 RILCK-FFVHGSCLKGENCEFSHD 26
                 569**.7777*************6 PP
2zf-CCCH22.61.9e-073454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  C f+++  +C yG+rC++ H+
  AT3G08505.1 34 VCTFYQK-RICLYGSRCRYDHV 54
                 5******.*************7 PP
3zf-CCCH20.86.9e-07104126326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+ fa+ G C++G++C+ +Hg
  AT3G08505.1 104 YPICS-FAAAGDCPRGNQCPHMHG 126
                  78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.84128IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4629IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8592956IPR000571Zinc finger, CCCH-type
SMARTSM003560.363055IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-43454IPR000571Zinc finger, CCCH-type
SMARTSM003560.028101127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.155101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.89E-13158234No hitNo description
Gene3DG3DSA:3.30.40.102.5E-10162229IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.31E-4169229No hitNo description
PfamPF000974.3E-8170227IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.489170228IPR001841Zinc finger, RING-type
SMARTSM001842.5E-7170227IPR001841Zinc finger, RING-type
PROSITE patternPS005180194203IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.15257285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126257286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEFSHDSKDP PNNVCTFYQK RICLYGSRCR YDHVRAASNL  60
PLSSDSESLD RSISTTPSRH LQQQGDNNDG DKSSNVYCIH PREYPICSFA AAGDCPRGNQ  120
CPHMHGDLCN TCGKKCLHPF RPEEREEHTK ECEKKQKHIE ALKQSQDIEC SVCLDRILSK  180
ATPGERKFGL LTECDHPFCI QCIRNWRSSA PVSGMDVNST LRACPICRKL SYFVVPSVVW  240
YSSPEEKKEI IDIYKAKLRS IDCKHFNFGN GNCPFGASCF YKHAYSDGHL EEVVLRHLGS  300
QEGETVITDS IRLSEFLGGL QIF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT3G08505
AtGenExpressAT3G08505
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G08505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G08505
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001325802.10.0zinc finger (CCCH-type/C3HC4-type RING finger) family protein
RefseqNP_850540.10.0zinc finger (CCCH-type/C3HC4-type RING finger) family protein
RefseqNP_974255.10.0zinc finger (CCCH-type/C3HC4-type RING finger) family protein
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A178V9070.0A0A178V907_ARATH; Uncharacterized protein
STRINGAT3G08505.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Representative plantOGRP40671523
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  4. Park HC, et al.
    Identification and molecular properties of SUMO-binding proteins in Arabidopsis.
    Mol. Cells, 2011. 32(2): p. 143-51
    [PMID:21607647]