PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G05860.3 | ||||||||
Common Name | F10A16.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 29182 Da PI: 7.3793 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.1 | 2e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g+ KK +ELSvLC++e++ +i+s+ AT3G05860.3 11 ITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSP 50 89*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.703 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.87E-34 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009089 | anatomy | endosperm |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS 60 NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES NNKKMIDNAE RTMKEAMFQL 120 LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV 180 ENPNFNHLSH NQYQYQQQFG YPILVQDGIY NPSQIQNQHE EWLDDHMMNH SKEISHPLMD 240 DNNFYYQQP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258734_at | 0.0 | ||||
Expression Atlas | AT3G05860 | - | ||||
AtGenExpress | AT3G05860 | - | ||||
ATTED-II | AT3G05860 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G05860.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G36590 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G05860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC012393 | 0.0 | AC012393.5 Arabidopsis thaliana chromosome III BAC F10A16 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118585.1 | 0.0 | MADS-box transcription factor family protein | ||||
Swissprot | Q9FJK3 | 2e-45 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | Q9M9L1 | 0.0 | Q9M9L1_ARATH; MADS-box transcription factor family protein | ||||
STRING | AT3G05860.1 | 1e-177 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G05860.3 |
Entrez Gene | 819755 |
iHOP | AT3G05860 |
wikigenes | AT3G05860 |