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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT3G04100.1 |
| Common Name | AGL57, T6K12.28 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 207aa MW: 24098.1 Da PI: 10.5185 |
| Description |
AGAMOUS-like 57 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 54 | 2.1e-17 | 21 | 70 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k++en+ r +tfskR++gi+KK +EL +Cd+eva +ifs+ k y+++
AT3G04100.1 21 KKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFA 70
6789********************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF 60
SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE AYKKRRLHDL VKKMEALEEE 120
LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL 180
GKDCGGSSSV RVGRRVSGGV RLFDREA
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | ATAC016829 | 0.0 | AC016829.7 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete sequence. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| GenBank | DQ056586 | 0.0 | DQ056586.1 Arabidopsis thaliana MADS-box family protein (At3g04100) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Hoen DR, et al.
Transposon-mediated expansion and diversification of a family of ULP-like genes.
Mol. Biol. Evol., 2006. 23(6): p. 1254-68
[PMID:16581939] - Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
Plant Physiol., 2010. 154(1): p. 287-300
[PMID:20631316]
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