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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT3G03260.1 |
Common Name | HDG8, HDGL2-8, T17B22.5 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 699aa MW: 78426.2 Da PI: 6.3178 |
Description |
homeodomain GLABROUS 8 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.1 | 7.4e-19 | 25 | 79 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+ +++t++q+++Le++F+++++p++++r +L ++l+L+ +q+k+WFqN+R++ k
AT3G03260.1 25 RTCHRHTPQQIQRLEAYFKECPHPDERQRNQLCRELKLEPDQIKFWFQNKRTQSK 79
555689**********************************************998 PP
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2 | START | 116.5 | 3.7e-37 | 214 | 435 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81
+a +a +el ++ laee++Wvks + + +e++ + + ++e ++a++vv ++ +l + +ld +W+e ++ ka t
AT3G03260.1 214 IAASAVEELKRLFLAEEQFWVKSCideTYVIDTESYER-----FshavkhfssttAHVESSKAVTVVHVEAINLIQMFLDPE-KWKELFPtivnKANT 305
7889999*****************65533334444444.....3334567888889********************999999.******99999**** PP
EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
START 82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
+ v+ sg ++lq+m +l lsplvp R+f++vR++++ ++g w+i+d v+++++ + + + ++pSg+li+ +++ hskv w+ehv+
AT3G03260.1 306 IHVLGSGlpirgncNVLQVMWEQLHILSPLVPaREFMVVRCCQEIEKGIWIIAD--VSHRANFD--FGNAACYKRPSGCLIQALPDAHSKVMWIEHVE 399
******************************************************..55666653..46688899************************ PP
--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
++ +l h ++r l++ g gak+w tl+r ce+
AT3G03260.1 400 VDHKLDtHKIYRDLLSGGSGYGAKRWIVTLERMCER 435
*****99***************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
Protein Sequence Length: 699 aa
Download sequence Send
to blast |
MDNNGGGSSG NEQYTSGDAK QNGKRTCHRH TPQQIQRLEA YFKECPHPDE RQRNQLCREL 60 KLEPDQIKFW FQNKRTQSKT QEDRSTNVLL RGENETLQSD NEAMLDALKS VLCPACGGPP 120 FGREERGHNL QKLRFENARL KDHRDRISNF VDQHKPNEPT VEDSLAYVPS LDRISYGING 180 GNMYEPSSSY GPPNFQIIQP RPLAETDMSL LSEIAASAVE ELKRLFLAEE QFWVKSCIDE 240 TYVIDTESYE RFSHAVKHFS STTAHVESSK AVTVVHVEAI NLIQMFLDPE KWKELFPTIV 300 NKANTIHVLG SGLPIRGNCN VLQVMWEQLH ILSPLVPARE FMVVRCCQEI EKGIWIIADV 360 SHRANFDFGN AACYKRPSGC LIQALPDAHS KVMWIEHVEV DHKLDTHKIY RDLLSGGSGY 420 GAKRWIVTLE RMCERMALSS IQTLPPSDRS EVITTGEARR SVMKLGERMV KNFNEMLTMS 480 GKIDFPQQSK NGVRVSIRMN IEAGQPPGIV VSASSSLAIP LTPLQVFAFL QNLDTRQQWD 540 ILSYGTVVNE IARIVTGSSE TNCVTILRVH PTHEENNDKM VVQDSCKDDM LMLQDCYMDA 600 LGGMIVYAPM DMATMHFAVS GEVDPSHIPI LPSGFVISSD GRRSTVEDGG TLLTVAFQIL 660 VSGKANRSRE VNEKSVDTVS ALISSTIQRI KGLLNCPEC
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK117867 | 0.0 | AK117867.1 Arabidopsis thaliana At3g03260 mRNA for unknown protein, complete cds, clone: RAFL19-04-D14. |
Publications
? help Back to Top |
- Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2. Plant Mol. Biol., 2000. 42(5): p. 703-17 [PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Seki M, et al.
Functional annotation of a full-length Arabidopsis cDNA collection. Science, 2002. 296(5565): p. 141-5 [PMID:11910074] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol., 2004. 5(6): p. R41 [PMID:15186492] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Plant Physiol., 2006. 141(4): p. 1363-75 [PMID:16778018] - Day RC,Herridge RP,Ambrose BA,Macknight RC
Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol., 2008. 148(4): p. 1964-84 [PMID:18923020] - Kawanabe T,Fujimoto R,Sasaki T,Taylor JM,Dennis ES
A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis. Gene, 2012. 506(2): p. 301-9 [PMID:22796129]
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