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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT3G02940.1 |
| Common Name | AtMYB107, F13E7.11, MYB107 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MYB |
| Protein Properties |
Length: 321aa MW: 36627.9 Da PI: 6.6732 |
| Description |
myb domain protein 107 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l++ ++++G g+W++ ++ g++R++k+c++rw +yl
AT3G02940.1 14 KGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 57.4 | 3.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eE++ +++++ +lG++ W++Ia +++ gRt++++k++w+++
AT3G02940.1 67 RGNFTAEEEQTIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MGRSPCCDES GLKKGPWTPE EDQKLINHIR KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60
LRPDIKRGNF TAEEEQTIIN LHSLLGNKWS SIAGHLPGRT DNEIKNYWNT HIRKKLIQMG 120
IDPVTHRPRT DHLNVLAALP QLLAAANFNN LLNLNQNIQL DATSVAKAQL LHSMIQVLSN 180
NNTSSSFDIH HTTNNLFGQS SFLENLPNIE NPYDQTQGLS HIDDQPLDSF SSPIRVVAYQ 240
HDQNFIPPLI STSPDESKET QMMVKNKEIM KYNDHTSNPS STSTFTQDHQ PWCDIIDDEA 300
SDSYWKEIIE QTCSEPWPFR E
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a putative transcription factor (MYB107). |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Function -- GeneRIF ? help
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- MYB107 directly binds to the promoters of suberin biosynthetic genes, verifying its primary role in regulating their expression.
[PMID: 27965303]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF249310 | 0.0 | AF249310.2 Arabidopsis thaliana putative transcription factor (MYB107) mRNA, complete cds. |
| GenBank | AY519583 | 0.0 | AY519583.1 Arabidopsis thaliana MYB transcription factor (At3g02940) mRNA, complete cds. |
| GenBank | BT025660 | 0.0 | BT025660.1 Arabidopsis thaliana At3g02940 mRNA, complete cds. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana.
Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
[PMID:11597504] - Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
Plant J., 2004. 38(2): p. 366-79
[PMID:15078338] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Gibbs DJ,Coates JC
AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
Plant Signal Behav, 2014. 9(10): p. e970406
[PMID:25482809] - Gou M, et al.
The MYB107 Transcription Factor Positively Regulates Suberin Biosynthesis.
Plant Physiol., 2017. 173(2): p. 1045-1058
[PMID:27965303]
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