PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G47850.3 | ||||||||
Common Name | F17A22.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 468aa MW: 50040.5 Da PI: 8.8375 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.1e-11 | 48 | 72 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+++H++ AT2G47850.3 48 APDCAYYMRTGVCGYGNRCRYNHPR 72 589********************96 PP | |||||||
2 | zf-CCCH | 40.4 | 4.9e-13 | 91 | 117 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tGtCk+G++CkF+H++ AT2G47850.3 91 FGEPPCQFYLKTGTCKFGASCKFHHPK 117 5799*********************96 PP | |||||||
3 | zf-CCCH | 35.1 | 2.2e-11 | 141 | 163 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tG+Ck+G +CkF+H++ AT2G47850.3 141 ECSYYLKTGQCKFGITCKFHHPQ 163 7********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.2e-12 | 290 | 316 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +CkF+H++ AT2G47850.3 290 PGEPECQYYLKTGDCKFGTSCKFHHPR 316 5799*********************96 PP | |||||||
5 | zf-CCCH | 32.4 | 1.5e-10 | 337 | 362 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f+ ++G+Ck+G++CkF H++ AT2G47850.3 337 GVQRCTFYVQNGFCKFGSTCKFDHPM 362 6779********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.882 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 51 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.53 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-9 | 141 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 291 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 294 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 295 | 317 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 335 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-8 | 337 | 362 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 337 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-5 | 341 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD CAYYMRTGVC 60 GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL KTGTCKFGAS CKFHHPKNAG 120 GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ CKFGITCKFH HPQPAGTTVP PPPASAPQFY 180 PSVQSLMPDQ YGGPSSSLRV ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL 240 SPGAQHAVGA TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK 300 TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC KFGSTCKFDH 360 PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST ELIAGGAKDA YMTGVPTSRS 420 TSNISAGLIF SQSGGSIPFS ELQLSSQSSL PLTGSRITRQ GREIRRSF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.21006 | 0.0 | bud| flower| root| seed| silique| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30690808 | 0.0 | ||||
Genevisible | 266506_at | 0.0 | ||||
Expression Atlas | AT2G47850 | - | ||||
AtGenExpress | AT2G47850 | - | ||||
ATTED-II | AT2G47850 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G47850.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G47850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030391 | 0.0 | BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078078.1 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Refseq | NP_182306.2 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A178VZP2 | 0.0 | A0A178VZP2_ARATH; Uncharacterized protein | ||||
STRING | AT2G47850.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G47850.3 |
Entrez Gene | 819397 |
iHOP | AT2G47850 |
wikigenes | AT2G47850 |
Publications ? help Back to Top | |||
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