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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G42410.1 | ||||||||
Common Name | ATZFP11, ZFP11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 24353.3 Da PI: 8.988 | ||||||||
Description | zinc finger protein 11 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H AT2G42410.1 49 YTCSFCRREFRSAQALGGHMNVH 71 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.17E-6 | 46 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 47 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0061 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-5 | 49 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKRTHLASFS NRDKTQEEEG EDGNGDNRVI MNHYKNYEAG LIPWPPKNYT CSFCRREFRS 60 AQALGGHMNV HRRDRAKLRQ IPSWLFEPHH HTPIANPNPN FSSSSSSSTT TAHLEPSLTN 120 QRSKTTPFPS ARFDLLDSTT SYGGLMMDRE KNKSNVCSRE IKKSAIDACH SVRCEISRGD 180 LMNKKDDQVM GLELGMSLRN PNQVLDLELR LGYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-13 | 44 | 71 | 2 | 29 | superman protein |
2l1o_A | 6e-13 | 44 | 71 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18405964 | 0.0 | ||||
Genevisible | 265878_at | 0.0 | ||||
Expression Atlas | AT2G42410 | - | ||||
AtGenExpress | AT2G42410 | - | ||||
ATTED-II | AT2G42410 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|Ref.4}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a zinc finger protein ZFP11. Overexpression of ZFP11 causes mortality and a deformed phenotype. | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G42410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G42410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005956 | 0.0 | AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001324609.1 | 1e-161 | zinc finger protein 11 | ||||
Refseq | NP_001324610.1 | 1e-162 | zinc finger protein 11 | ||||
Refseq | NP_181770.1 | 1e-162 | zinc finger protein 11 | ||||
Swissprot | Q9SLB8 | 1e-163 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | A0A1P8B0T0 | 1e-160 | A0A1P8B0T0_ARATH; Zinc finger protein 11 | ||||
STRING | AT2G42410.1 | 1e-161 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 | Representative plant | OGRP576 | 15 | 81 |
Link Out ? help Back to Top | |
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Phytozome | AT2G42410.1 |
Entrez Gene | 818842 |
iHOP | AT2G42410 |
wikigenes | AT2G42410 |
Publications ? help Back to Top | |||
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