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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT2G36080.1 |
| Common Name | ABS2, ARF31, F9C22.1, NGAL1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
B3 |
| Protein Properties |
Length: 244aa MW: 28435.2 Da PI: 6.7984 |
| Description |
B3 family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 102.9 | 1.8e-32 | 38 | 143 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
f+k ltpsdv+k++rlv+pk++ae++ + e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++++++
AT2G36080.1 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGG 134
99*****************************99644.46888*************************************************9888999 PP
..EEEEE-S CS
B3 91 elvvkvfrk 99
+++++++r+
AT2G36080.1 135 RFFIGWRRR 143
9******97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0080167 | Biological Process | response to karrikin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA 60
ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA 120
GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS 180
KTLRLFGVNM ECQLDSDWSE PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM 240
NRTS
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 6e-49 | 31 | 143 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 6e-49 | 31 | 143 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity. |
| Function -- GeneRIF ? help
Back to Top |
- Over-expression of B3 transcription factor, ABS2/NGAL1, is capable of altering flower petal development, as well as shoot development. [NGAL1]
[PMID: 23185464]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK117587 | 0.0 | AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Seki M, et al.
Functional annotation of a full-length Arabidopsis cDNA collection.
Science, 2002. 296(5565): p. 141-5
[PMID:11910074] - Hudson ME,Lisch DR,Quail PH
The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway.
Plant J., 2003. 34(4): p. 453-71
[PMID:12753585] - Stepanova AN,Yun J,Likhacheva AV,Alonso JM
Multilevel interactions between ethylene and auxin in Arabidopsis roots.
Plant Cell, 2007. 19(7): p. 2169-85
[PMID:17630276] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Swaminathan K,Peterson K,Jack T
The plant B3 superfamily.
Trends Plant Sci., 2008. 13(12): p. 647-55
[PMID:18986826] - Ikeda M,Ohme-Takagi M
A novel group of transcriptional repressors in Arabidopsis.
Plant Cell Physiol., 2009. 50(5): p. 970-5
[PMID:19324928] - Nelson DC, et al.
Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana.
Proc. Natl. Acad. Sci. U.S.A., 2010. 107(15): p. 7095-100
[PMID:20351290] - Causier B,Ashworth M,Guo W,Davies B
The TOPLESS interactome: a framework for gene repression in Arabidopsis.
Plant Physiol., 2012. 158(1): p. 423-38
[PMID:22065421] - Shao J,Liu X,Wang R,Zhang G,Yu F
The over-expression of an Arabidopsis B3 transcription factor, ABS2/NGAL1, leads to the loss of flower petals.
PLoS ONE, 2012. 7(11): p. e49861
[PMID:23185464] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Tanaka M, et al.
The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
Plant Cell, 2016. 28(11): p. 2830-2849
[PMID:27760805]
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