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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT2G35700.1 |
| Common Name | ATERF38, ERF038, ERF38, T20F21.11 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
ERF |
| Protein Properties |
Length: 194aa MW: 21617.3 Da PI: 6.6865 |
| Description |
ERF family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.6 | 6.6e-18 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g
AT2G35700.1 44 NFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 93
69****998.**********854...6**********************99887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MERDDCRRFQ DSPAQTTERR VKYKPKKKRA KDDDDEKVVS KHPNFRGVRM RQWGKWVSEI 60
REPKKKSRIW LGTFSTAEMA ARAHDVAALA IKGGSAHLNF PELAYHLPRP ASADPKDIQA 120
AAAAAAAAVA IDMDVETSSP SPSPTVTETS SPAMIALSDD AFSDLPDLLL NVNHNIDGFW 180
DSFPYEEPFL SQSY
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| Functional Description ? help
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| Source |
Description |
| TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism. |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006068 | 0.0 | AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence. |
| GenBank | AY560845 | 0.0 | AY560845.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds. |
| GenBank | BT025754 | 0.0 | BT025754.1 Arabidopsis thaliana At2g35700 mRNA, complete cds. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Brown RL,Kazan K,McGrath KC,Maclean DJ,Manners JM
A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis.
Plant Physiol., 2003. 132(2): p. 1020-32
[PMID:12805630] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
Plant Physiol., 2006. 140(2): p. 411-32
[PMID:16407444] - Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
Plant Biotechnol. J., 2006. 4(3): p. 317-24
[PMID:17147637] - Lasserre E,Jobet E,Llauro C,Delseny M
AtERF38 (At2g35700), an AP2/ERF family transcription factor gene from Arabidopsis thaliana, is expressed in specific cell types of roots, stems and seeds that undergo suberization.
Plant Physiol. Biochem., 2008. 46(12): p. 1051-61
[PMID:18723362] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474]
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