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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT2G34820.1 |
| Common Name | BHLH53, EN123, F19I3.5 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 291aa MW: 33569.9 Da PI: 4.7572 |
| Description |
bHLH family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 21.3 | 5e-07 | 169 | 213 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+++ r RR+ri ++ +eL +l+P + Kl+ ae+ + A +Y+k Lq
AT2G34820.1 169 SIAARGRRRRIAEKTHELGKLIPGgN------KLNTAEMFQAAAKYVKFLQ 213
6778*******************955......******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MSMDCLSYFF NYDPPVQLQD CFIPEMDMII PETDSFFFQS QPQLEFHQPL FQEEAPSQTH 60
FDPFCDQFLS PQEIFLPNPK NEIFNETHDL DFFLPTPKRQ RLVNSSYNCN TQNHFQSRNP 120
NFFDPFGDTD FVPESCTFQE FRVPDFSLAF KVGRGDQDDS KKPTLSSQSI AARGRRRRIA 180
EKTHELGKLI PGGNKLNTAE MFQAAAKYVK FLQSQVGILQ LMQTTKKGSS NVQMETQYLL 240
ESQAIQEKLS TEEVCLVPCE MVQDLTTEET ICRTPNISRE INKLLSKHLA N
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY234412 | 0.0 | AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Xiao YL,Malik M,Whitelaw CA,Town CD
Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
Plant Physiol., 2002. 130(4): p. 2118-28
[PMID:12481096] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281]
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