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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT2G33835.1 |
| Common Name | FES1, T1B8 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C3H |
| Protein Properties |
Length: 587aa MW: 64375.5 Da PI: 6.4605 |
| Description |
C3H family protein |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.6 | 7.9e-07 | 101 | 121 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+ffa+ G+C G +CkF H+
AT2G33835.1 101 PCKFFAK-GWCFNGVSCKFLHV 121
7******.*************7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 587 aa
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to blast |
MSDSDMDIDD DEVEQKVQVH TIVRESELFD KPPIQASNSH NDVKRHSVTT PLDEQSKIIK 60
EQAFAQDNGT LPRFPAPGIP PRSFFTGGGG NEPEQKRAAL PCKFFAKGWC FNGVSCKFLH 120
VKENSNCTSQ QLAENSMAGN GGIRSDLERR ILDSREGVRV SQLSENGVTS LPTREDISFM 180
NPQRVFSSMS FVNPPGSQRV FPFNNEMRFM PSFENIRRES LKQTYGADFT DNRSLVINNA 240
NSFALRSSFV HEHRPSISSY LKTDMGSAGP AWTGSLSSSV PMNDRASTVG DFENGNSLSG 300
SGSLPTLQGV AVSSDKGAEA NTTSTKKKVS SDDWEPSEPF KASFTIPPYI LPSSDALYDP 360
FTDIENLGDR PLNDSLSSKG EHARKSSCQQ KDGDSASGPQ ARDCKNDDKS SSCSQNQHQE 420
TVARSLEAHG VVEGVATSVV DQNDTATPSK EISSATAAEN RVVLKRIKPA GHDSWHRSDG 480
SSYKKTKKSD EIDGEVRSDA GMKVMRLFRT AVVETIKEML KPLWREGRLT KDVHNMIVKK 540
AAEKVVGAAV QFHQVPTDTE SVDQYLGLSG TRIVKLVEGY VEKYGKP
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in root and shoot apices and vasculature. {ECO:0000269|PubMed:16291783}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a zinc finger domain containing protein that is expressed in the shoot/root apex and vasculature, and acts with FRI to repress flowering.FES1 mutants in a Col(FRI+) background will flower early under inductive conditions. |
| UniProt | Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}. |
| Function -- GeneRIF ? help
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- Epistasis analysis between FES1, FRI and FRIGIDA-LIKE 1 (FRL1), indicates that these genes do not function in a linear pathway, but instead act cooperatively to promote the expression of FLC.
[PMID: 16291783]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228866 | 0.0 | AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15. |
| Publications
? help Back to Top |
- Xiao YL,Malik M,Whitelaw CA,Town CD
Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
Plant Physiol., 2002. 130(4): p. 2118-28
[PMID:12481096] - Schmitz RJ,Hong L,Michaels S,Amasino RM
FRIGIDA-ESSENTIAL 1 interacts genetically with FRIGIDA and FRIGIDA-LIKE 1 to promote the winter-annual habit of Arabidopsis thaliana.
Development, 2005. 132(24): p. 5471-8
[PMID:16291783] - Kim S,Choi K,Park C,Hwang HJ,Lee I
SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C.
Plant Cell, 2006. 18(11): p. 2985-98
[PMID:17138694] - Proveniers M,Rutjens B,Brand M,Smeekens S
The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC.
Plant J., 2007. 52(5): p. 899-913
[PMID:17908157] - Wang D, et al.
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
BMC Genomics, 2008. 9: p. 44
[PMID:18221561] - Choi K, et al.
The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors.
Plant Cell, 2011. 23(1): p. 289-303
[PMID:21282526] - Ding L,Kim SY,Michaels SD
FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
Plant Physiol., 2013. 163(1): p. 243-52
[PMID:23899645] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178]
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